Identification of hub glycogenes and their nsSNP analysis from mouse RNA-Seq data
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- 作者：Ahmad Firoza ; b ; ahmadfirozbin@gmail.com" class="auth_mail" title="E-mail the corresponding author ; Adeel Malikc ; adeel@procarb.org" class="auth_mail" title="E-mail the corresponding author ; Sanjay Kumar Singhb ; Vivekanand Jhab ; d ; Amjad Alia
- 关键词：nsSNP ; Non synonymous single nucleotide polymorphism ; RNA-Seq ; RNA sequencing ; MYOGkd ; Myogenin knock-down ; DEGGs ; Differentially expressed glycogense ; SNPs ; Single nucleotide polymorphisms ; DAVID ; Database for Annotation ; Visualization and Integrated Discovery ; GO ; Gene ontology ; KEGG ; Kyoto Encyclopedia of Genes and Genomics ; KAAS ; KEGG Automatic Annotation Server ; KO ; KEGG orthology ; SBH ; Single-directional best hit ; BLAST ; Basic Local Alignment Search Tool ; SLC2A4 ; Solute carrier family 2 ; f
- 刊名：Gene
- 出版年：2015
- 出版时间：15 December 2015
- 年：2015
- 卷：574
- 期：2
- 页码：235-246
- 全文大小：2146 K
文摘
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We create an interaction network of 923 glycogenes detected from mouse RNA-Seq data.
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These glycogenes play roles in immune response and various metabolic processes.
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We identify hub glycogenes from the network.
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Coding nsSNPs were identified for hubs by computational analysis.