Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows
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- 作者：Michael T. Kriegera ; c ; michael.krieger@risc-software.at" class="auth_mail" title="E-mail the corresponding authorAuthor Vitae ; Oscar Torrenoa ; bAuthor Vitae ; Oswaldo TrellesbAuthor Vitae ; Dieter Kranzlmü ; llercAuthor Vitae
- 关键词：Bioinformatics ; Biomedicine ; Workflows ; Cloud computing ; Auto-scaling ; GridFTP
- 刊名：Future Generation Computer Systems
- 出版年：2017
- 出版时间：February 2017
- 年：2017
- 卷：67
- 期：Complete
- 页码：329-340
- 全文大小：1681 K
文摘
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We describe a scalable full open source cloud stack covering IaaS, PaaS, and SaaS.
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For high-throughput data transfers we integrate GridFTP with Galaxy.
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We enable automatic scaling of cloud resources for Galaxy with dynamicTORQUE.
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We present two use cases of bioinformatics and biomedical applications in the cloud.
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Runtime of applications can be speeded up through efficient scaling or resources.