Genome-wide identification, classification and expression analysis of the PHD-finger protein family in Populus trichocarpa
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- 作者：Shengnan Wua ; b ; Min Wua ; Qing Dongb ; Haiyang Jiangb ; Ronghao Caib ; Yan Xianga ; b ;
- 关键词：PHD ; plant homeobox domain ; pI ; isoelectric point ; Mya ; million years ago ; CDS ; coding sequences ; HMM ; hidden Markov model ; NJ ; neighbor-joining ; At ; Arabidopsis thaliana ; Pt ; Populus trichocarpa ; GEO ; Gene Expression Omnibus ; NCBI ; National Center for Biotechnology Information
- 刊名：Gene
- 出版年：2016
- 出版时间：1 January 2016
- 年：2016
- 卷：575
- 期：1
- 页码：75-89
- 全文大小：4019 K
文摘
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We identified 73 full-length PHD genes in the poplar genome.
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We found 7 segmental duplication and 2 tandem duplication events in this family.
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Ka/Ks analysis showed that most paralogous genes experienced purifying selection.
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We analyzed the expression patterns of nine candidate PtPHD genes in response to stress.
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