RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data

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• 作者：Miriam Rubio-Camarillo^a ; ¹ ; Hugo Ló ; pez-Ferná ; ndez^b ; ^c ; ¹ ; ^{hlfernandez@uvigo.es} ; Gonzalo Gó ; mez-Ló ; pez^a ; Á ; ngel Carro^a ; José ; Marí ; a Ferná ; ndez^d ; Coral Fustero Torre^a ; Florentino Fdez-Riverola^b ; ^c ; Daniel Glez-Peñ ; a^b ; ^c
• 关键词：NGS analysis ; Whole-genome ; Variant calling ; ChIPSeq ; Bisulfite-Seq ; CNV
• 刊名：Computer Methods and Programs in Biomedicine
• 出版年：2017
• 出版时间：January 2017
• 年：2017
• 卷：138
• 期：Complete
• 页码：73-81
• 全文大小：1641 K
• 卷排序：138

文摘

RUbioSeq+, a multiplatform application for the integrated analysis of NGS data, is presented. It implements pipelines for analysing SNVs, CNVs, bisulfite-seq and ChIP-seq experiments, using well-established tools. It also includes a new GUI designed for research groups where bioinformaticians and biomedical researchers work together. To our knowledge, there is no other current application with similar characteristics and utilities for NGS data analysis. RUbioSeq+ results have been already validated and published.