Calibration of optical tweezers with non-spherical probes via high-resolution detection of Brownian motion

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• 作者：A. Butykai^a ; ^{butykai@dept.phy.bme.hu" class="auth_mail" title="E-mail the corresponding author} ; F.M. Mor^b ; R. Gaá ; l^b ; P. Domí ; nguez-Garcí ; a^c ; L. Forró ; ^b ; S. Jeney^b
• 关键词：Calibration of optical tweezers ; Non-spherical probe ; Brownian motion ; Power spectral density (PSD) ; Mean square displacement (MSD) ; Velocity autocorrelation function (VAF)
• 刊名：Computer Physics Communications
• 出版年：2015
• 出版时间：November 2015
• 年：2015
• 卷：196
• 期：Complete
• 页码：599-610
• 全文大小：1463 K

文摘

Optical tweezers are commonly used and powerful tools to perform force measurements on the piconewton scale and to detect nanometer-scaled displacements. However, the precision of these instruments relies to a great extent on the accuracy of the calibration method. A well-known calibration procedure is to record the stochastic motion of the trapped particle and compare its statistical behavior with the theory of the Brownian motion in a harmonic potential. Here we present an interactive calibration software which allows for the simultaneous fitting of three different statistical observables (power spectral density, mean square displacement and velocity autocorrelation function) calculated from the trajectory of the probe to enhance fitting accuracy. The fitted theory involves the hydrodynamic interactions experimentally observable at high sampling rates. Furthermore, a qualitative extension is included in our model to handle the thermal fluctuations in the orientation of optically trapped asymmetric objects. The presented calibration methodology requires no prior knowledge of the bead size and can be applied to non-spherical probes as well. The software was validated on synthetic and experimental data.

Program summary

Program title: PFMCal

Catalogue identifier: AEXH_v1_0

Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEXH_v1_0.html

Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland

Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html

No. of lines in distributed program, including test data, etc.: 206,399

No. of bytes in distributed program, including test data, etc.: 10,319,465

Distribution format: tar.gz

Programming language: MatLab 2011a (MathWorks Inc.).

Computer: General computer running MatLab (MathWorks Inc.), using Statistics Toolbox.

Operating system: Any which supports Matlab using Statistics Toolbox.

RAM: 10 MB

Classification: 3, 4.9, 18, 23.

Nature of problem: Calibration of optical tweezers by measuring the Brownian motion of the trapped object. The voltage-to-displacement ratio of the detection system (the inverse of the sensitivity), the stiffness of the trap and the size of the bead are obtained via the simultaneous fitting of the power spectral density (PSD), mean square displacement (MSD) and velocity autocorrelation (VAF) functions calculated from the trajectory. The calibration can be performed for non-spherical probes as well.

Solution method: Initialization points for all parameters are inferred from characteristic features of the statistical observables (PSD, MSD and VAF) based on the method developed by Grimm et al. in [1]. Theoretical functions for the PSD, the MSD and the VAF are calculated from the model of Brownian motion confined by a harmonic potential taking hydrodynamic interactions into consideration [2–4]. This calibration methodology has been successfully used in actual experiments with micro-spheres [5, 6]. Calculated functions are fitted to the measurement data via the Levenberg–Marquardt least square fitting routine available in the MatLab Optimalization Toolbox, using the nlinfit function. If the error to the measured data has been estimated, the corresponding data values can be weighted by the inverse of the standard error squared in order to eliminate bias introduced by heteroscedasticity. In order to increase robustness and avoid convergence to local minima, minimum search from multiple initial values in the vicinity of the first guess is possible.

Additional comments:   Input of the program is the experimental ${\mathrm{PSD}}^{exp}$, ${\mathrm{MSD}}^{exp}$, and ${\mathrm{VAF}}^{exp}$ data points calculated from the measured x,y$x,y$ and z$z$ projections of the trajectory of the particle. The data may best be blocked and may optionally contain an error for each data point for better results. The data should be formatted into three columns: 1. independent variables (time or frequency array), 2. function values, 3. optionally, error values (e.g. standard error calculated from the binning) to improve fitting efficiency. In case error values were not estimated, the third column should be filled with zeros. The first row is reserved for a header, data is read from the second row. Data size should not be larger than a few hundreds of rows, otherwise, using larger blocks for binning is advised. In order to observe the short time behavior of the Brownian motion, influenced by hydrodynamic effects, the sampling rate should be typically higher than 100 kHz. Total sampling time is typically tens of seconds, to achieve a good resolution in the frequency range. The optical axis of the laser, the microscope and the detector system should be co-aligned to exclude artificial crosstalk between the x,y$x,y$ and z$z$ channels of the position detector.

Running time: Seconds

References:

[1]

M. Grimm, T. Franosch, and S. Jeney. High-resolution detection of Brownian motion for quantitative optical tweezers experiments. Phys. Rev. E, 86:021912, Aug 2012.

[2]

R. Zwanzig and M. Bixon. Hydrodynamic theory of the velocity correlation function. Physical Review A, 2(5):2005, 1970.

[3]

E.J. Hinch. Application of the Langevin equation to fluid suspensions. Journal of Fluid Mechanics, 72:499–511, 12 1975.

[4]

H. Clercx and P Schram. Brownian particles in shear. flow and harmonic potentials: A study of long-time tails. Physical Review A, 46(4):1942, 1992.

[5]

P. Domínguez-García, F. Cardinaux, E. Bertseva, L. Forró, F. Scheffold, and S. Jeney, Accounting for inertia effects to access the high-frequency microrheology of viscoelastic fluids, Phys. Rev. E, vol. 90, p. 060301, Dec 2014.

[6]

P. Domínguez-García, F.M. Mor, L. Forró, and S. Jeney, Exploiting the color of Brownian motion for high-frequency microrheology of Newtonian fluids, Proc. SPIE 8810 (2013) 881015–881015-6.