Monte Carlo simulation for kinetic chemotaxis model: An application to the traveling population wave

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• 作者：Shugo Yasuda¹ ; ^{yasuda@sim.u-hyogo.ac.jp}
• 关键词：Chemotaxis ; Bacteria ; Kinetic theory ; Monte Carlo simulation
• 刊名：Journal of Computational Physics
• 出版年：2017
• 出版时间：1 February 2017
• 年：2017
• 卷：330
• 期：Complete
• 页码：1022-1042
• 全文大小：861 K
• 卷排序：330

文摘

A Monte Carlo simulation of chemotactic bacteria is developed on the basis of the kinetic model and is applied to a one-dimensional traveling population wave in a microchannel. In this simulation, the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to calculate the macroscopic transport of the chemical cues in the environment. The simulation method can successfully reproduce the traveling population wave of bacteria that was observed experimentally and reveal the microscopic dynamics of bacterium coupled with the macroscopic transports of the chemical cues and bacteria population density. The results obtained by the Monte Carlo method are also compared with the asymptotic solution derived from the kinetic chemotaxis equation in the continuum limit, where the Knudsen number, which is defined by the ratio of the mean free path of bacterium to the characteristic length of the system, vanishes. The validity of the Monte Carlo method in the asymptotic behaviors for small Knudsen numbers is numerically verified.