The antitumor agent
coralyne and a number of structural analogueswere found to beinhibitors of DNA topoisomerase I and were characterized biochemically.Several of theseanalogues stabilized the covalent binary complex formed between calfthymus topoisomeraseI and pSP64 plasmid DNA;
coralyne and 5,6-dihydro
coralyne had thegreatest potency asinhibitors in this assay. In common with camptothecin, the effectsof
coralyne and 5,6-dihydro
coralyne were reversed in the presence of increasing saltconcentration or temperature,consistent with the interpretation that both functioned mechanisticallyin a fashion analogousto camptothecin. The sequence specificity of DNA cleavage by
coralyne and 5,6-dihydro
coralynewas also studied in comparison with camptothecin using a 471-bp DNAduplex as a substratefor topoisomerase I. Seven sites of cleavage were apparent, fourof which were shared incommon by
coralyne, 5,6-dihydro
coralyne and camptothecin. Coralyneand 5,6-dihydro
coralyneproduced cleavage at one sequence, 5'-TCTC
GTAA-3',that was not apparent in the presenceof camptothecin; correspondingly, two cleavage bands appeared only whencamptothecin waspresent. Coralyne and 5,6-dihydro
coralyne also inhibitedtopoisomerase I-mediated relaxationof supercoiled plasmid DNA. Coralyne was the most potent inhibitorof DNA relaxation; theeffects of camptothecin and 5,6-dihydro
coralyne were roughly equal.At high concentrations,
coralyne completely suppressed the formation of the topoisomeraseI-DNA covalent binarycomplex.