DNA strand transfer reactions occur t
wice during retroviral reverse transcription catalyzed byHIV-1 reverse transcriptase. The 4-chlorophenylhydrazone of mesoxalic acid (CPHM)
was found to
bean inhibitor of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase. Using a modelstrand transfer assay system described previously [Davis, W. R., et al. (1998)
Biochemistry 37, 14213-14221], the mechanism of CPHM inhibition of DNA strand transfer has been characterized. CPHM
wasfound to target the RNase H activity of HIV-1 reverse transcriptase. DNA polymerase activity
was notsignificantly affected by CPHM; ho
wever, it did inhibit the polymerase-independent RNase H activity
with an IC
50 of 2.2
M. In the absence of DNA synthesis, CPHM appears to interfere
with the translocation,or repositioning, of RT on the RNA·DNA template duplex, a step required for efficient RNA hydrolysisby RNase H. Enzyme inhibition by CPHM
was found to be highly specific for HIV-1 reverse transcriptase;little or no inhibition of DNA strand transfer or DNA polymerase activity
was observed
with MLV orAMV reverse transcriptase, T7 DNA polymerase, or DNA polymerase I. Examination of additional4-chlorophenylhydrazones sho
wed that the dicarboxylic acid moiety of CPHM is essential for activity,suggesting its important role for enzyme binding. Consistent
with the role of the dicarboxylic acid ininhibitor function, Mg
2+ was found to chelate directly to CPHM
with a
Kd of 2.4 mM. Together, thesestudies suggest that the inhibitor may function by binding to enzyme-bound divalent metal cofactors.