The recent design strategy of zinc finger peptides has mainly focused on the
-helix region,which plays a direct role in DNA recognition. On the other hand, the study of non-DNA-contacting regionsis extremely scarce. By swapping the
-hairpin regions between the Sp1 and GLI zinc fingers, in thisstudy, we investigated how the
-hairpin region of the C
2H
2-type zinc finger peptides contributes to theDNA binding properties. Surprisingly, the Sp1 mutant with the GLI-type
-hairpin had a higher DNAbinding affinity than that of the wild-type Sp1. The result of the DNase I footprinting analyses also showedthe change in the DNA binding pattern. In contrast, the GLI zinc finger completely lost DNA bindingability as a result of exchanging the
-hairpin region. These results strongly indicate that the
-hairpinregion appears to function as a scaffold and has an important effect on the DNA binding properties of theC
2H
2-type zinc finger peptides.