An on-chip microreactor was proposed toward the acceleration of protein digestion through the constructionof a nanozeolite-assembled network. The nanozeolitemicrostructure was assembled using a layer-by-layertechnique based on poly(diallyldimethylammonium chloride) and zeolite nanocrystals. The adsorption of trypsinin the nanozeolite network was theoretically studied basedon the Langmuir adsorption isotherm model. It was foundthat the controlled trypsin-containing nanozeolite networks assembled within a microchannel could act as astationary phase with a large surface-to-volume ratio forthe highly efficient proteolysis of both proteins at lowlevels and with complex extracts. The maximum proteolytic rate of the adsorbed trypsin was measured to be350 mM min
-1 g
-1, much faster than that in solution.Moreover, due the large surface-to-volume ratio andbiocompatible microenvironment provided by the nanozeolite-assembled films as well as the microfluidic confinement effect, the low-level proteins down to 16 fmol peranalysis were confidently identified using the as-preparedmicroreactor within a very short residence time coupledto matrix-assisted laser desorption-time-of-flight massspectrometry. The on-chip approach was further demonstrated in the identification of the complex extracts frommouse macrophages integrated with two-dimensionalliquid chromatography-electrospray ionization-tandem massspectrometry. This microchip reactor is promising for thedevelopment of a facile means for protein identification.