Recent studies of
-secretase have pointed out that it may be comprised of a multisubunitcomplex with presenilin 1 and presenilin 2 as central components. Elucidation of the biochemical mechanismof this enzymatic activity will provide important information for developing
-secretase inhibitors inAlzheimer's disease therapy. Here we describe the biochemical characterization of
-secretase activitiesusing a sensitive, membrane-based assay system. Membranes were isolated from 293 cells expressingC99, the substrate of
-secretase. Upon incubation at 37
C, C99 is cleaved by the endogenous
-secretase,and A
peptides are liberated. A
40 and A
42
-secretase activities are very similar in terms of theirkinetic profiles and pH dependence, supporting the notion that a single enzyme is involved in both A
40and A
42 production. Pepstatin A inhibited A
40 and A
42
-secretase activities with similar potency.Peptide difluoroketone and peptide aldehyde inhibitors inhibited A
40 production in a dose-dependentfashion, enhanced A
42 production at low concentrations, and inhibited A
42 production at highconcentrations. Although the selective increase of A
42 by low concentrations of peptide difluoroketoneand peptide aldehyde inhibitors has been reported in intact cells, the finding that this phenomenon occursin a membrane-based assay system suggests that these compounds increase A
42 by a direct effect on
-secretase. The ability of these compounds to increase A
42 production may reflect allosteric modulationof the
-secretase complex by a mechanism related to that responsible for the increase of A
42 productionby mutations in presenilins.