Owing to its high the
rmal stability and st
ructu
ral simplicity, the a
rchaebacte
rium
ThermoplasmaAcidophilum 20S p
roteasome was selected fo
r mechanistic studies in this wo
rk. This oligome
ric enzymecomplex consists of a ba
rrel-shaped 20S co
re (~700kDa) comp
rised of fou
r stacked seven-membe
red
rings with a
rs/alpha.gif" BORDER=0>
7rs/beta2.gif" BORDER=0 ALIGN="mid
dle">
7rs/beta2.gif" BORDER=0 ALIGN="mid
dle">
7rs/alpha.gif" BORDER=0>
7 subunit st
ructu
re situated a
round a 7-fold symmet
ry axis. The hollow inte
rio
r ofthe p
roteasome has th
ree la
rge inte
rconnected chambe
rs with na
rrow (13 &A
ring; diamete
r) ent
rances f
romsolution located at eithe
r end of the ba
rrel. The 14
rs/beta2.gif" BORDER=0 ALIGN="mid
dle">-subunit p
roteolytic sites a
re located on the inne
rsu
rface of the cent
ral chambe
r. He
rein, we demonst
rate that unfolded ho
rse hea
rt fe
rricytoch
rome
c (Cyt
c) is a novel ch
romopho
ric p
robe fo
r investigation of the mechanism of p
roteasome action. Unde
r conditionsof tempe
ratu
re and denatu
rant which unfold Cyt
c but do not alte
r the the
rmophilic p
roteasome, Cyt
c isextensively cleaved by the p
roteasome. Ten peptides we
re isolated and sequenced f
rom the p
roteasomedigest. Analysis of the cleavage p
roducts established that unfolded Cyt
c and its covalently attached hemep
rosthetic g
roup a
re t
ranslocated to the cent
ral chambe
r whe
re p
roteolysis occu
rs. In the p
resence ofsite-specific inhibito
rs of the p
roteasome, we demonst
rate that unfolded cytoch
rome
c can be sequeste
redinside the p
roteasome complex. Upon cooling, a quasistable host-guest complex is fo
rmed. Analysis ofthe complex via UV/visible spect
roscopy and mass spect
romet
ry gave evidence that the sequeste
red Cyt
c is essentially intact within the inhibited p
roteasome. High-pe
rfo
rmance liquid ch
romatog
raphy data showthat (1) complexes with an appa
rent stoichiomet
ry of app
roximately one Cyt
c pe
r p
roteasome can befo
rmed and (2) when inhibition is
removed f
rom the complex, a
rapid tu
rnove
r of the sequeste
red Cyt
coccu
rs.