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Komagataella populi sp. nov. and Komagataella ulmi sp. nov., two new methanol assimilating yeasts from exudates of deciduous trees
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  • 作者:Cletus P. Kurtzman (1) cletus.kurtzman@ars.usda.gov
  • 关键词:New ascosporic yeasts – ; Methanol yeasts – ; Komagataella
  • 刊名:Antonie van Leeuwenhoek
  • 出版年:2012
  • 出版时间:May 2012
  • 年:2012
  • 卷:101
  • 期:4
  • 页码:859-868
  • 全文大小:265.2 KB
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    6. Kurtzman CP (2005) Description of Komagataella phaffii sp. nov. and the transfer of Pichia pseudopastoris to the methylotrophic yeast genus Komagataella. Int J Sys Evol Microbiol 55:973–976
    7. Kurtzman CP (2009) Biotechnological strains of Komagataella (Pichia) pastoris are Komagataella phaffii as determined from multigene sequence analysis. J Ind Microbiol Biotechnol 36:1435–1438
    8. Kurtzman CP (2011a) Komagataella Y. Yamada, Matsuda, Maeda, Mikata (1995). In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier Science B.V., Amsterdam, pp 491–495
    9. Kurtzman CP (2011b) Ogataea Y. Yamada, K. Maeda, Mikata (1994). In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier Science B.V., Amsterdam, pp 645–671
    10. Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73:331–371
    11. Kurtzman CP, Robnett CJ (2003) Phylogenetic relationships among yeasts of the ‘Saccharomyces complex’ determined from multigene sequence analyses. FEMS Yeast Res 3:417–432
    12. Kurtzman CP, Robnett CJ (2010) Systematics of methanol assimilating yeasts and neighboring taxa from multigene sequence analysis and the proposal of Peterozyma gen. nov., a new member of the Saccharomycetales. FEMS Yeast Res 10:353–361
    13. Kurtzman CP, Robnett CJ, Ward JN, Brayton C, Gorelick P, Walsh TJ (2005) Multigene phylogenetic analysis of pathogenic Candida species in the Kazachstania (Arxiozyma) telluris complex and description of their ascosporic states as Kazachstania bovina sp. nov., K. heterogenica sp. nov., K. pintolopesii sp. nov., and K. slooffiae sp. nov. J Clin Microbiol 43:101–111
    14. Kurtzman CP, Fell JW, Boekhout T, Robert V (2011) Methods for isolation, phenotypic characterization and maintenance of yeasts. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier Science B.V., Amsterdam, pp 87–110
    15. Lachance MA, Daniel HM, Meyer W, Prasad GS, Gautam SP, Boundy-Mills K (2003) The D1/D2 domain of the large-subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic. FEMS Yeast Res 4:253–258
    16. P茅ter G (2011) Kuraishia Y. Yamada, Maeda, Mikata (1994). In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier Science B.V., Amsterdam, pp 503–506
    17. Scorzetti G, Fell JW, Fonseca A, Statzell-Tallman A (2002) Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Res 2:495–517
    18. Swofford DL (1998) PAUP*4.0: phylogenetic analysis using parsimony. Sinauer Associates, Sunderland, MA
    19. Vaughan-Martini A, Kurtzman CP, Meyer SA, O’Neill EB (2005) Two new species in the Pichia guilliermondii clade: Pichia caribbica sp. nov., the ascosporic state of Candida fermentati, and Candida carpophila comb. nov. FEMS Yeast Res 5:463–469
    20. Wu Q, James SA, Roberts IN, Moulton V, Huber KT (2008) Exploring contradictory phylogenetic relations in yeasts. FEMS Yeast Res 8:641–650
    21. Yamada Y, Maeda K, Mikata K (1994) The phylogenetic relationships of the hat-shaped ascospore-forming, nitrate-assimilating Pichia species, formerly classified in the genus Hansenula Sydow et Sydow, based on the partial sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae): the proposals of three new genera, Ogataea, Kuraishia, and Nakazawaea. Biosci Biotechnol Biochem 58:1245–1257
    22. Yamada Y, Matsuda M, Maeda K, Mikata K (1995) The phylogenetic relationships of methanol-assimilating yeasts based on the partial sequences of 18S and 26S ribosomal RNAs: the proposal of Komagataella gen. nov. (Saccharomycetaceae). Biosci Biotechnol Biochem 59:439–444
  • 作者单位:1. Bacterial Foodborne Pathogens and Mycology Research Unit, U.S. Department of Agriculture, National Center for Agricultural Utilization Research, Agricultural Research Service, 1815 North University Street, Peoria, IL 61604, USA
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Microbiology
    Medical Microbiology
    Plant Sciences
    Soil Science and Conservation
  • 出版者:Springer Netherlands
  • ISSN:1572-9699
文摘
Two new species of the methanol assimilating ascosporic yeast genus Komagataella are described. Komagataella populi sp. nov. (NRRL YB-455, CBS 12362, type strain, MycoBank accession number = 564110) was isolated from an exudate on a cottonwood tree (Populus deltoides), Peoria, Illinois, USA, and Komagataella ulmi sp. nov. (NRRL YB-407, CBS 12361, type strain, MycoBank accession number = 564111) was isolated from the exudate on an elm tree (Ulmus americana), also growing in Peoria, Illinois. The species were resolved from divergence in gene sequences for domains D1/D2 LSU rRNA, ITS1-5.8S-ITS2, mitochondrial small subunit rRNA, RNA polymerase subunit 1 and translation elongation factor-1α. Species of Komagataella assimilate few carbon compounds and are unlikely to be resolved from differences in standard growth and fermentation tests. For this reason, separation of species is dependent on gene sequence analysis.

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