Classification of thermophilic actinobacteria isolated from arid desert soils, including the description of Amycolatopsis deserti sp. nov.

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• 作者：Kanungnid Busarakam ; Ros Brown ; Alan T. Bull…
• 关键词：Amycolatopsis ; Polyphasic taxonomy ; Desert soils
• 刊名：Antonie van Leeuwenhoek
• 出版年：2016
• 出版时间：February 2016
• 年：2016
• 卷：109
• 期：2
• 页码：319-334
• 全文大小：669 KB
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• 作者单位：Kanungnid Busarakam (1) (6)
  Ros Brown (1)
  Alan T. Bull (2)
  Geok Yuan Annie Tan (3)
  Tiago D. Zucchi (4) (5)
  Leonardo José da Silva (4)
  Wallace Rafael de Souza (4)
  Michael Goodfellow (1)
  
  1. School of Biology, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
  6. Department of Agricultural Technology, Thailand Institute of Scientific and Technological Research, Pathum Thani, 12120, Thailand
  2. School of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK
  3. Institute of Biological Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia
  4. Laboratório de Microbiologia, EMBRAPA Meio Ambiente, Rod SP 340-Km 127, PO Box 69, Jaguariúna, 13820-000, Brazil
  5. Agrivalle, Av. Tranquillo Giannini, 1050, Salto, 13329-600, Brazil
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Microbiology
  Medical Microbiology
  Plant Sciences
  Soil Science and Conservation
  
• 出版者：Springer Netherlands
• ISSN：1572-9699

文摘

The taxonomic position of 26 filamentous actinobacteria isolated from a hyper-arid Atacama Desert soil and 2 from an arid Australian composite soil was established using a polyphasic approach. All of the isolates gave the diagnostic amplification product using 16S rRNA oligonucleotide primers specific for the genus Amycolatopsis. Representative isolates had chemotaxonomic and morphological properties typical of members of the genus Amycolatopsis. 16S rRNA gene analyses showed that all of the isolates belong to the Amycolatopsis methanolica 16S rRNA gene clade. The Atacama Desert isolates were assigned to one or other of two recognised species, namely Amycolatopsis ruanii and Amycolatopsis thermalba, based on 16S rRNA gene sequence, DNA:DNA relatedness and phenotypic data; emended descriptions are given for these species. In contrast, the two strains from the arid Australian composite soil, isolates GY024T and GY142, formed a distinct branch at the periphery of the A. methanolica 16S rRNA phyletic line, a taxon that was supported by all of the tree-making algorithms and by a 100 % bootstrap value. These strains shared a high degree of DNA:DNA relatedness and have many phenotypic properties in common, some of which distinguished them from all of the constituent species classified in the A. methanolica 16S rRNA clade. Isolates GY024T and GY142 merit recognition as a new species within the A. methanolica group of thermophilic strains. The name proposed for the new species is Amycolatopsis deserti sp. nov.; the type strain is GY024T (=NCIMB 14972T = NRRL B-65266T). Keywords Amycolatopsis Polyphasic taxonomy Desert soils