Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing
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- 作者：Doori Park (1)
Je Won Jung (1)
Beom-Soon Choi (2)
Murukarthick Jayakodi (3)
Jeongsoo Lee (2)
Jongsung Lim (2)
Yeisoo Yu (4)
Yong-Soo Choi (5)
Myeong-Lyeol Lee (5)
Yoonseong Park (6)
Ik-Young Choi (2)
Tae-Jin Yang (3)
Owain R Edwards (7)
Gyoungju Nah (3)
Hyung Wook Kwon (1)
1. Biomodulation Major ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
2. National Instrumentation Center for Environmental Management ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-742 ; Republic of Korea
3. Department of Plant Science ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
4. Arizona Genomics Institute ; University of Arizona ; Tucson ; Arizona ; 85721 ; USA
5. National Institute of Agricultural Biotechnology ; Rural development Administration ; Suwon ; 441-707 ; Republic of Korea
6. Department of Entomology ; Kansas State University ; Manhattan ; Kansas ; USA
7. CSIRO Ecosystem Sciences ; Centre for Environment and Life Sciences ; Underwood Avenue ; Floreat ; WA ; 6014 ; Australia - 关键词：Apis cerana ; Asian honey bee ; Genome ; Social insect ; Chemosensory receptors ; Honey bee immunity
- 刊名：BMC Genomics
- 出版年：2015
- 出版时间：December 2015
- 年：2015
- 卷：16
- 期：1
- 全文大小：99 KB
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- 出版者：BioMed Central
- ISSN：1471-2164
文摘
Background The honey bee is an important model system for increasing understanding of molecular and neural mechanisms underlying social behaviors relevant to the agricultural industry and basic science. The western honey bee, Apis mellifera, has served as a model species, and its genome sequence has been published. In contrast, the genome of the Asian honey bee, Apis cerana, has not yet been sequenced. A. cerana has been raised in Asian countries for thousands of years and has brought considerable economic benefits to the apicultural industry. A cerana has divergent biological traits compared to A. mellifera and it has played a key role in maintaining biodiversity in eastern and southern Asia. Here we report the first whole genome sequence of A. cerana. Results Using de novo assembly methods, we produced a 238 Mbp draft of the A. cerana genome and generated 10,651 genes. A.cerana-specific genes were analyzed to better understand the novel characteristics of this honey bee species. Seventy-two percent of the A. cerana-specific genes had more than one GO term, and 1,696 enzymes were categorized into 125 pathways. Genes involved in chemoreception and immunity were carefully identified and compared to those from other sequenced insect models. These included 10 gustatory receptors, 119 odorant receptors, 10 ionotropic receptors, and 160 immune-related genes. Conclusions This first report of the whole genome sequence of A. cerana provides resources for comparative sociogenomics, especially in the field of social insect communication. These important tools will contribute to a better understanding of the complex behaviors and natural biology of the Asian honey bee and to anticipate its future evolutionary trajectory.