A novel bocavirus in canine liver
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- 作者：Linlin Li (1) (2)
Patricia A Pesavento (3)
Christian M Leutenegger (4)
Marko Estrada (4)
Lark L Coffey (1) (2)
Samia N Naccache (2) (5)
Erik Samayoa (2) (5)
Charles Chiu (2) (5)
Jianming Qiu (6)
Chunlin Wang (7)
Xutao Deng (1)
Eric Delwart (1) (2) - 关键词：Canine bocavirus 3 ; Episome ; Coinfection
- 刊名：Virology Journal
- 出版年：2013
- 出版时间：December 2013
- 年：2013
- 卷：10
- 期：1
- 全文大小：271KB
- 参考文献：1. Tattersall P, Bergoin M, Bloom M, Brown K, Linden R, Tijssen P: / Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Edited by: Fauquet C, Mayo M, Maniloff J, Desselberger U, Ball L. San Diego: Academic; 2005:353-69.
2. Jartti T, Hedman K, Jartti L, Ruuskanen O, Allander T, Soderlund-Venermo M: Human bocavirus-the first 5?years. / Rev Med Virol 2012, 22:46-4. CrossRef
3. Chen KC, Shull BC, Moses EA, Lederman M, Stout ER, Bates RC: Complete nucleotide sequence and genome organization of bovine parvovirus. / J Virol 1986, 60:1085-097.
4. Cheng WX, Li JS, Huang CP, Yao DP, Liu N, Cui SX, Jin Y, Duan ZJ: Identification and nearly full-length genome characterization of novel porcine bocaviruses. / PLoS One 2010, 5:e13583. 371/journal.pone.0013583">CrossRef
5. Shan T, Lan D, Li L, Wang C, Cui L, Zhang W, Hua X, Zhu C, Zhao W, Delwart E: Genomic characterization and high prevalence of bocaviruses in swine. / PLoS One 2011, 6:e17292. 371/journal.pone.0017292">CrossRef
6. Shan T, Li L, Simmonds P, Wang C, Moeser A, Delwart E: The fecal virome of pigs on a high-density farm. / J Virol 2011, 85:11697-1708. CrossRef
7. Kapoor A, Mehta N, Esper F, Poljsak-Prijatelj M, Quan PL, Qaisar N, Delwart E, Lipkin WI: Identification and characterization of a new bocavirus species in gorillas. / PLoS One 2010, 5:e11948. 371/journal.pone.0011948">CrossRef
8. Sharp CP, LeBreton M, Kantola K, Nana A, Diffo Jle D, Djoko CF, Tamoufe U, Kiyang JA, Babila TG, Ngole EM: Widespread infection with homologues of human parvoviruses B19, PARV4, and human bocavirus of chimpanzees and gorillas in the wild. / J Virol 2010, 84:10289-0296. 304-10">CrossRef
9. Li L, Shan T, Wang C, Cote C, Kolman J, Onions D, Gulland FM, Delwart E: The fecal viral flora of California sea lions. / J Virol 2011, 85:9909-917. CrossRef
10. Kapoor A, Mehta N, Dubovi EJ, Simmonds P, Govindasamy L, Medina JL, Street C, Shields S, Lipkin WI: Characterization of novel canine bocaviruses and their association with respiratory disease. / J Gen Virol 2012, 93:341-46. 36624-0">CrossRef
11. Lau SK, Woo PC, Yeung HC, Teng JL, Wu Y, Bai R, Fan RY, Chan KH, Yuen KY: Identification and characterization of bocaviruses in cats and dogs reveals a novel feline bocavirus and a novel genetic group of canine bocavirus. / J Gen Virol 2012, 93:1573-582. 31-0">CrossRef
12. Ohshima T, Kawakami K, Abe T, Mochizuki M: A minute virus of canines (MVC: canine bocavirus) isolated from an elderly dog with severe gastroenteritis, and phylogenetic analysis of MVC strains. / Vet Microbiol 2010, 145:334-38. 3.033">CrossRef
13. Schwartz D, Green B, Carmichael LE, Parrish CR: The canine minute virus (minute virus of canines) is a distinct parvovirus that is most similar to bovine parvovirus. / Virology 2002, 302:219-23. CrossRef
14. Wu Z, Ren X, Yang L, Hu Y, Yang J, He G, Zhang J, Dong J, Sun L, Du J: Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. / J Virol 2012, 86:10999-1012. 394-12">CrossRef
15. van den Brand JM, van Leeuwen M, Schapendonk CM, Simon JH, Haagmans BL, Osterhaus AD, Smits SL: Metagenomic analysis of the viral flora of pine marten and European badger feces. / J Virol 2012, 86:2360-365. 373-11">CrossRef
16. Manteufel J, Truyen U: Animal bocaviruses: a brief review. / Intervirology 2008, 51:328-34. 3734">CrossRef
17. Schildgen O, Qiu J, Soderlund-Venermo M: Genomic features of the human bocaviruses. / Future Virol 2012, 7:31-9. 36">CrossRef
18. Kapoor A, Hornig M, Asokan A, Williams B, Henriquez JA, Lipkin WI: Bocavirus episome in infected human tissue contains non-identical termini. / PLoS One 2011, 6:e21362. 371/journal.pone.0021362">CrossRef
19. Lusebrink J, Schildgen V, Tillmann RL, Wittleben F, Bohmer A, Muller A, Schildgen O: Detection of head-to-tail DNA sequences of human bocavirus in clinical samples. / PLoS One 2011, 6:e19457. 371/journal.pone.0019457">CrossRef
20. Yang WZ, Huang CP, Duan ZJ: [Identification and characterization of porcine bocavirus episomes]. / Bing Du Xue Bao 2012, 28:418-23.
21. Binn LN, Lazar EC, Eddy GA, Kajima M: Recovery and characterization of a minute virus of canines. / Infect Immun 1970, 1:503-08.
22. Segales J: Porcine circovirus type 2 (PCV2) infections: clinical signs, pathology and laboratory diagnosis. / Virus Res 2012, 164:10-9. CrossRef
23. Victoria JG, Kapoor A, Dupuis K, Schnurr DP, Delwart EL: Rapid identification of known and new RNA viruses from animal tissues. / PLoS Pathog 2008, 4:e1000163. 371/journal.ppat.1000163">CrossRef
24. Victoria JG, Kapoor A, Li L, Blinkova O, Slikas B, Wang C, Naeem A, Zaidi S, Delwart E: Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. / J Virol 2009, 83:4642-651. 301-08">CrossRef
25. Kumar S, Nei M, Dudley J, Tamura K: MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. / Brief Bioinform 2008, 9:299-06. 3/bib/bbn017">CrossRef - 作者单位：Linlin Li (1) (2)
Patricia A Pesavento (3)
Christian M Leutenegger (4)
Marko Estrada (4)
Lark L Coffey (1) (2)
Samia N Naccache (2) (5)
Erik Samayoa (2) (5)
Charles Chiu (2) (5)
Jianming Qiu (6)
Chunlin Wang (7)
Xutao Deng (1)
Eric Delwart (1) (2)
1. Blood Systems Research Institute, San Francisco, CA, USA
2. Department of Laboratory Medicine, University of California, San Francisco, CA, USA
3. Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA
4. IDEXX Reference Laboratories, Kragujevac, CA, USA
5. UCSF-Abbott Viral Diagnostics and Discovery Center, Kragujevac, CA, USA
6. Department of Microbiology, University of Kansas, Kragujevac, KS, USA
7. Stanford Genome Technology Center, Stanford, CA, USA - ISSN：1743-422X
文摘
Background Bocaviruses are classified as a genus within the Parvoviridae family of single-stranded DNA viruses and are pathogenic in some mammalian species. Two species have been previously reported in dogs, minute virus of canines (MVC), associated with neonatal diseases and fertility disorders; and Canine bocavirus (CBoV), associated with respiratory disease. Findings In this study using deep sequencing of enriched viral particles from the liver of a dog with severe hemorrhagic gastroenteritis, necrotizing vasculitis, granulomatous lymphadenitis and anuric renal failure, we identified and characterized a novel bocavirus we named Canine bocavirus 3 (CnBoV3). The three major ORFs of CnBoV3 (NS1, NP1 and VP1) shared less than 60% aa identity with those of other bocaviruses qualifying it as a novel species based on ICTV criteria. Inverse PCR showed the presence of concatemerized or circular forms of the genome in liver. Conclusions We genetically characterized a bocavirus in a dog liver that is highly distinct from prior canine bocaviruses found in respiratory and fecal samples. Its role in this animal’s complex disease remains to be determined.