Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1
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- 作者：Geir Mathiesen (1)
Anita Sveen (1)
May Bente Brurberg (2)
Lasse Fredriksen (1)
Lars Axelsson (3)
Vincent GH Eijsink (1) - 刊名：BMC Genomics
- 出版年：2009
- 出版时间：December 2009
- 年：2009
- 卷：10
- 期：1
- 全文大小：1245KB
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Anita Sveen (1)
May Bente Brurberg (2)
Lasse Fredriksen (1)
Lars Axelsson (3)
Vincent GH Eijsink (1)
1. Department of Chemistry Biotechnology and Food Science, Norwegian University of Life Sciences, Center for Molecular Microbiology, Chr. M. Falsensvei 1., P.O. Box 5003, N-1432, 脜s, Norway
2. Plant Health and Plant Protection Division, Norwegian Institute for Agricultural and Environmental Research, H酶gskoleveien 7, 1432, 脜s, Norway
3. Norfima Mat, Osloveien 1, N-1430, 脜s, Norway
文摘
Background Lactobacillus plantarum is a normal, potentially probiotic, inhabitant of the human gastrointestinal (GI) tract. The bacterium has great potential as food-grade cell factory and for in situ delivery of biomolecules. Since protein secretion is important both for probiotic activity and in biotechnological applications, we have carried out a genome-wide experimental study of signal peptide (SP) functionality. Results We have constructed a library of 76 Sec-type signal peptides from L. plantarum WCFS1 that were predicted to be cleaved by signal peptidase I. SP functionality was studied using staphylococcal nuclease (NucA) as a reporter protein. 82% of the SPs gave significant extracellular NucA activity. Levels of secreted NucA varied by a dramatic 1800-fold and this variation was shown not to be the result of different mRNA levels. For the best-performing SPs all produced NucA was detected in the culture supernatant, but the secretion efficiency decreased for the less well performing SPs. Sequence analyses of the SPs and their cognate proteins revealed four properties that correlated positively with SP performance for NucA: high hydrophobicity, the presence of a transmembrane helix predicted by TMHMM, the absence of an anchoring motif in the cognate protein, and the length of the H+C domain. Analysis of a subset of SPs with a lactobacillal amylase (AmyA) showed large variation in production levels and secretion efficiencies. Importantly, there was no correlation between SP performance with NucA and the performance with AmyA. Conclusion This is the first comprehensive experimental study showing that predicted SPs in the L. plantarum genome actually are capable of driving protein secretion. The results reveal considerable variation between the SPs that is at least in part dependent on the protein that is secreted. Several SPs stand out as promising candidates for efficient secretion of heterologous proteins in L. plantarum. The results for NucA provide some hints as to the sequence-based prediction of SP functionality, but the general conclusion is that such prediction is difficult. The vector library generated in this study is based on exchangeable cassettes and provides a powerful tool for rapid experimental screening of SPs.