Genome constitution and classification using retrotransposon-based markers in the orphan crop banana
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- 作者：Chee How Teo (1) (2)
Siang Hee Tan (3)
Chai Ling Ho (1)
Qamaruz Zaman Faridah (4)
Yasmin Rofina Othman (5)
John Seymour Heslop-Harrison (2)
Ruslan Kalendar (6)
Alan Howard Schulman (6) (7) - 关键词：genome constitution ; Inter ; Retrotransposon Amplified Polymorphism ; long terminal repeat ; Musa ; phylogenetic analysis ; retrotransposon
- 刊名：Journal of Plant Biology
- 出版年：2005
- 出版时间：March 2005
- 年：2005
- 卷：48
- 期：1
- 页码：96-105
- 全文大小：3219KB
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Siang Hee Tan (3)
Chai Ling Ho (1)
Qamaruz Zaman Faridah (4)
Yasmin Rofina Othman (5)
John Seymour Heslop-Harrison (2)
Ruslan Kalendar (6)
Alan Howard Schulman (6) (7)
1. Department of Biotechnology, Faculty of Food Science and Biotechnology, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
2. Department of Biology, University of Leicester, LE1 7RH, Leicester, United Kingdom
3. Molecular Biology Department, Sime Darby Technology Centre Sdn Bhd, 2, Jalan Tandang, 46050, Petaling Jaya, Selangor, Malaysia
4. Department of Biology, Faculty of Science and Environmental Studies, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
5. Institute of Biological Sciences, Universiti Malaya, 50603, Kuala Lumpur, Malaysia
6. MTT/BI Plant Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Viikinkaari 9, P.O. Box 56, FIN-00014, Helsinki, Finland
7. Plant Breeding Biotechnology, MTT Agrifood Research Finland, Myllytie 10, FIN-00810, Jokioinen, Finland
文摘
We have exploited the repetitive and dispersed nature of many long terminal repeat (LTR)-retrotransposon families for characterizing genome constitutions and classifying cultivars of the genusMusa. Insertional polymorphisms of the elements were studied using seven published and two newly designed primers facing outwards from the LTRs and reverse transcriptase (RT) domain of the retrotransposon. The primers generated specific amplification patterns showing the universal applicability of this marker type. The Inter-Retrotransposon Amplified Polymorphism (IRAP) markers distinguished the A and B genomes of the banana species (Musa acuminata Col la andMusa balbisiana Colla) and between banana cultivars. The IRAP markers enabled phylogenetic analysis of 16 Malaysian banana cultivars and determination of the genome constitution of hybrid banana (AAB, ABB, AABB, and AAAB), and gave information about ancestral genotypes of the hybrids. In addition, the IRAP detected new retrotransposon insertions into the genome of tissue culture regenerants. This PCR-based IRAP assay is amenable to large-scale throughput demands in screening breeding populations and is applicable for any crop.