用户名: 密码: 验证码:
Theoretical study of the conformational equilibrium of 1,4-dioxane in gas phase, neat liquid, and dilute aqueous solutions
详细信息    查看全文
  • 作者:Rute Barata-Morgado (1)
    M. Luz Sánchez (1)
    Ignacio Fdez. Galván (1) (2)
    José C. Corchado (1)
    M. Elena Martín (1)
    Aurora Mu?oz-Losa (1)
    Manuel A. Aguilar (1)
  • 关键词:1 ; 4 ; Dioxane ; ASEP/MD ; QM/MM ; Conformational equilibrium ; Solvent effect
  • 刊名:Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)
  • 出版年:2013
  • 出版时间:October 2013
  • 年:2013
  • 卷:132
  • 期:10
  • 全文大小:550 KB
  • 参考文献:1. Yang TC, Ning CG, Su GL, Deng JK, Zhang SF, Ren XG, Huang YR (2006) Chin Phys Lett 23:1157-160 CrossRef
    2. Senthilkumar K, Kolandaivel P (2003) Comput Biol Chem 27:173-83 CrossRef
    3. Pickett LW, Hoeflich NJ, Liu TC (1951) J Am Chem Soc 73:4865-869 CrossRef
    4. Mizuno K, Imafuji S, Fujiwara T, Ohta T, Tamiya Y (2003) J Phys Chem B 107:3972-978 CrossRef
    5. Takamuku T, Yamaguchi A, Tabata M, Yoshida K, Wakita H, Yamaguchi T (1999) J Mol Liq 83:163-77 CrossRef
    6. Ahn-Ercan G, Krienke H, Schmeer G (2006) J Mol Liq 129:75-9 CrossRef
    7. Chapman DM, Hester RE (1997) J Phys Chem A 101:3382-387 CrossRef
    8. Nagy PI, Volgyi G, Takacs-Novak K (2008) J Phys Chem B 112:2085-094 CrossRef
    9. Krienke H, Ahn-Ercan G, Barthel J (2004) J Mol Liq 109:115-24 CrossRef
    10. Cinacchi G, Ingrosso F, Tani A (2006) J Phys Chem B 110:13633-3641 CrossRef
    11. Takamuku T, Yamaguchi A, Matsuo D, Tabata M, Yamaguchi T, Otomo T, Adachi T (2001) J Phys Chem B 105:10101-0110 CrossRef
    12. Pchelkin VN, Toryanik AI (1991) Zh Strukt Khim 32(2):88-7
    13. Chang HC, Jiang JC, Chuang CW, Lin JS, Lai WW, Yang YC, Lin SH (2005) Chem Phys Lett 410:42-8 CrossRef
    14. Fdez. Galván I, Sánchez ML, Martín ME, Olivares del Valle FJ, Aguilar MA (2003) Comput Phys Commun 155:244-59 CrossRef
    15. García Prieto FF, Fdez-Galván I, Aguilar MA, Martín ME (2011) J Chem Phys 135:194502-94510 CrossRef
    16. Corchado JC, Sánchez ML, Aguilar MA (2004) J Am Chem Soc 126:7311-319 CrossRef
    17. Sánchez ML, Martín ME, Aguilar MA, Olivares del Valle FJ (2000) J Comput Chem 21:705-15 CrossRef
    18. Martín ME, Sánchez ML, Olivares del Valle FJ, Aguilar MA (2002) J Chem Phys 116:1613-620 CrossRef
    19. Sánchez ML, Martín ME, Fdez Galván I, Olivares del Valle FJ, Aguilar MA (2002) J Phys Chem B 106:4813-817 CrossRef
    20. Fdez. Galván I, Sánchez ML, Martín ME, Olivares del Valle FJ, Aguilar MA (2003) J Chem Phys 118:255-63 CrossRef
    21. Fdez. Galván I, Martín ME, Aguilar MA (2004) J Comput Chem 25:1227-233 CrossRef
    22. Sánchez ML, Aguilar MA, Olivares del Valle FJ (1997) J Comput Chem 18:313-22 CrossRef
    23. Aguilar MA, Sánchez ML, Martín ME, Fdez. Galván I (2007) An effective hamiltonian method from simulations: ASEP/MD. In: Mennucci, B, Cammi R (eds) Continuum solvation models in chemical physics, 1st edn. Wiley, West Sussex, England, chapter 4.5, pp 580-92
    24. Warshel A, Levitt M (1976) J Mol Biol 103:227-49 CrossRef
    25. Field MJ, Bash PA, Karplus M (1990) J Comput Chem 11:700-33 CrossRef
    26. Luzhkov V, Warshel A (1992) J Comput Chem 13:199-13 CrossRef
    27. Gao J (1992) J Phys Chem 96:537-40 CrossRef
    28. Vasilyev VV, Bliznyuk AA, Voityuk AA (1992) Int J Quantum Chem 44:897-30 CrossRef
    29. Théry V, Rinaldi D, Rivail JL, Maigret B, Ferenczy GG (1994) J Comput Chem 15:269-82 CrossRef
    30. Thompson MA, Glendening ED, Feller D (1994) J Phys Chem 98:10465-0476 CrossRef
    31. Mu?oz Losa A, Fdez. Galván I, Martín ME, Aguilar MA (2006) J Phys Chem B 110:18064-8071 CrossRef
    32. Chandrasekhar J, Smith SF, Jorgensen WL (1985) J Am Chem Soc 107:154-63 CrossRef
    33. Chandrasekhar J, Jorgensen WL (1985) J Am Chem Soc 107:2974-975 CrossRef
    34. Jorgensen WL (1989) Acc Chem Res 22:184-89 CrossRef
    35. Okuyama-Yoshida N, Nagaoka M, Yamabe T (1998) Int J Quantum Chem 70:95-03 CrossRef
    36. Wei D, Salahub DR (1994) Chem Phys Lett 224:291-96 CrossRef
    37. Tu?ón I, Martins-Costa MTC, Millot C, Ruiz-López MF, Rivail JL (1996) J Comput Chem 17:19-9 CrossRef
    38. Wesolowski TA, Warshel A (1993) J Phys Chem 97:8050-053 CrossRef
    39. Wesolowski TA, Muller RP, Warshel A (1996) J Phys Chem 100:15444-5449 CrossRef
    40. Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) J Chem Phys 79:926-35 CrossRef
    41. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA Jr, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas ?, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian 09. Gaussian Inc., Wallingford, CT
    42. Refson K (2000) Comput Phys Commun 126:310-29 CrossRef
    43. Chirlian LE, Breneman CM, Francl MM (1987) J Comput Chem 8:894-05 CrossRef
    44. Breneman CM, Wiberg KB (1990) J Comput Chem 11:361-73 CrossRef
    45. Tomasi J, Mennucci B, Cammi R (2005) Chem Rev 105:2999-094 CrossRef
    46. Martín ME, Sánchez ML, Olivares del Valle FJ, Aguilar MA (2002) J Chem Phys 116(4):1613-620 CrossRef
    47. Humphrey W, Dalke A, Schulten K (1996) J Mol Graph?14:33-8 CrossRef
    48. Hernandez GJ, Duncan ABF (1962) J Chem Phys 36:1504-508 CrossRef
  • 作者单位:Rute Barata-Morgado (1)
    M. Luz Sánchez (1)
    Ignacio Fdez. Galván (1) (2)
    José C. Corchado (1)
    M. Elena Martín (1)
    Aurora Mu?oz-Losa (1)
    Manuel A. Aguilar (1)

    1. área de Química Física, Edif. José María Viguera Lobo, Universidad de Extremadura, Avda. de Elvas s/n, 06006, Badajoz, Spain
    2. Department of Chemistry, ?ngstr?m, The Theoretical Chemistry Programme, Uppsala University, P.O. Box 518, SE-751 20, Uppsala, Sweden
  • ISSN:1432-2234
文摘
The conformational equilibrium of 1,4-dioxane in the gas phase, in the pure liquid, and in aqueous solution has been studied by means of the Average Solvent Electrostatic Potential from Molecular Dynamics (ASEP/MD) method and the Integral Equation Formalism for the Polarizable Continuum Model (IEF-PCM). The dioxane molecule was described at the DFT(B3LYP)/aug-cc-pVTZ level. In the three phases, the equilibrium is almost completely shifted toward the chair conformer, with populations of the twist-boat conformers lower than 0.01?%. The equilibrium is dominated by the internal energy of the molecule, as the solute–solvent interaction free energies are very similar in the three conformers considered (chair, 1,4 twist-boat, and 2,5 twist-boat). In the pure liquid, where the dioxane–dioxane interaction is dominated by the Lennard-Jones term, the structure is characteristic of a van der Waals liquid. However, the decrease in the C–H distance from gas phase to solution, the increase in the C–H vibrational frequencies, and the presence of a shoulder in the O–Haxial pair radial distribution function point to the presence of a weak C–H–O hydrogen bond. The analysis of the occupancy maps of water oxygen and hydrogen atoms around the 1,4-dioxane molecule confirms this conclusion. Contrary to what is found in small water-dioxane clusters, in the liquid, there is a preference for oxygen atoms to interact with axial hydrogen atoms to form C–H–O hydrogen bonds. Comparison of ASEP/MD and IEF-PCM results indicates that including specific interactions is very important for an adequate description of the solute–solvent interaction; however, the influence of these interactions does not translate in changes in the relative stability of the conformers because it cancels out when energy differences are calculated.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700