Synteny between Zoysia japonica Steud. and Oryza sativa L. based on RFLP, CISP and PLUG markers

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• 作者：Manli Li ; Xiao Qi ; Nana Yuyama ; Yunwen Wang…
• 关键词：Linkage map ; Molecular marker ; Oryza sativa ; Synteny ; Zoysia japonica
• 刊名：Genetic Resources and Crop Evolution
• 出版年：2015
• 出版时间：August 2015
• 年：2015
• 卷：62
• 期：6
• 页码：853-862
• 全文大小：552 KB
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• 作者单位：Manli Li (1)
  Xiao Qi (4) (5)
  Nana Yuyama (3)
  Yunwen Wang (1)
  Yan Sun (1)
  Peisheng Mao (1)
  Hongwei Cai (2) (3)
  
  1. Department of Grassland Science, College of Animal Science and Technology, China Agricultural University, 2 Yuanmingyuan West Road, Beijing, 100193, China
  4. Institute of Grassland Research of Chinese Academy of Agricultural Sciences, 120 Wulanchabu East Street, Saihan District, Hohhot, 010010, Inner Mongolia, China
  5. National Animal Husbandry Service, 20 Maizidian Street, Chaoyang District, Beijing, 100125, China
  3. Forage Crop Research Institute, Japan Grassland Agricultural and Forage Seed Association, 388-5 Higashiakada, Nasushiobara, Tochigi, 329-2742, Japan
  2. Department of Plant Genetics and Breeding, College of Agronomy and Biotechnology, China Agricultural University, 2 Yuanmingyuan West Road, Beijing, 100193, China
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Sciences
  Plant Physiology
  Plant Pathology
  
• 出版者：Springer Netherlands
• ISSN：1573-5109

文摘

In order to study the synteny between Zoysia japonica and Oryza sativa, we added three types of markers including Restriction fragment length polymorphism, Conserved intron scanning primers and PCR-based landmark unique gene in our previous high-density SSR-based linkage map. A total of 100 loci showed homology to the rice genome were merged into our previously constructed SSR-based linkage map of zoysiagrass. The new map was longer than all zoysiagrass genetic maps reported previously, and contains the number of linkage groups 20, which is equal to the haploid number of chromosomes of zoysiagrass. The new mapped 100 homologous loci were mapped to 19 linkage groups (LGs) except of LG 20, of them, the LGs 2, 8 and 13 of zoysiagrass showed colinearity with chromosomes 3, 6 and 1 of rice respectively, and other LGs of zoysiagrass contained variable numbers of markers that showed homology with the rice genome. These results suggested a syntenic relationship between zoysiagrass and rice. The improved genetic linkage map and the new markers developed in this study will serve as reference genetic linkage maps for zoysiagrass species and will be useful for mapping QTLs associated with various traits, and for improving zoysiagrass breeding programs.