Characterization of genome-wide simple sequence repeats and application in interspecific genetic map integration in kiwifruit

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• 作者：Chunyan Liu ; Qiong Zhang ; Xiaohong Yao ; Caihong Zhong…
• 关键词：Actinidia ; SSRs ; Linkage map ; Sex ; linked markers ; Interspecific hybridization
• 刊名：Tree Genetics & Genomes
• 出版年：2016
• 出版时间：April 2016
• 年：2016
• 卷：12
• 期：2
• 全文大小：567 KB
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• 作者单位：Chunyan Liu (1) (2)
  Qiong Zhang (1)
  Xiaohong Yao (1)
  Caihong Zhong (1)
  Chunlin Yan (1) (2)
  Hongwen Huang (1)
  
  1. Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, Hubei, China
  2. University of Chinese Academy of Sciences, Beijing, 100049, China
  
• 刊物主题：Forestry; Plant Genetics & Genomics; Plant Breeding/Biotechnology; Tree Biology; Biotechnology;
• 出版者：Springer Berlin Heidelberg
• ISSN：1614-2950

文摘

Simple sequence repeats (SSRs) have been widely used in the construction of linkage maps, quantitative trait loci (QTLs) mapping, and marker-assisted selection (MAS). The availability of the sequenced Actinidia chinensis (kiwifruit) genome allows for the inexpensive and efficient development of microsatellite markers. In this study, a total of 49,067 SSRs were identified and characterized in the genome sequences of kiwifruit. Dinucleotide repeats are the most abundant SSRs, with the AG/TC motif accounting for 44.2 % of all SSRs in the genome. Fifty-five newly derived SSRs, together with 46 previously available SSRs, were integrated into linkage maps of an interspecific kiwifruit population. In addition, eight sex-linked SSR markers (including one previously published SSR) were mapped in the sex-related region on the LG25, suggesting that recombination is partially suppressed to maintain dioecy in kiwifruit. The SSRs developed from this study are a valuable resource for kiwifruit genetics and will contribute to the use of MAS in early sex determination of dioecious plant breeding.