Wangella harbinensis gen. nov., sp. nov., a new member of the family Micromonosporaceae

详细信息    查看全文

• 作者：Feiyu Jia (1)
  Chongxi Liu (1)
  Xiangjing Wang (1)
  Junwei Zhao (1)
  Qianfeng Liu (1)
  Ji Zhang (1)
  Ruixia Gao (1)
  Wensheng Xiang (1)
  
• 关键词：Wangella harbinensis gen. nov. Sp. nov. ; Polyphasic taxonomy ; 16S rRNA gene
• 刊名：Antonie van Leeuwenhoek
• 出版年：2013
• 出版时间：February 2013
• 年：2013
• 卷：103
• 期：2
• 页码：399-408
• 全文大小：458KB
• 参考文献：1. Ara I, Kudo T (2006) Three novel species of the genus / Catellatospora, Catellatospora chokoriensis sp. nov., / Catellatospora coxensis sp. nov. and / Catellatospora bangladeshensis sp. nov., and transfer of / Catellatospora citrea subsp / . methionotrophica Asano and Kawamoto 1988 to / Catellatospora methionotrophica sp. nov., comb. nov. Int J Syst Evol Microbiol 56:393-00 CrossRef
  2. Ara I, Kudo T (2007a) / Luedemannella gen. nov., a new member of the family / Micromonosporaceae and description of / Luedemannella helvata sp. nov. and / Luedemannella flava sp. nov. J Gen Appl Microbiol 53:39-1 CrossRef
  3. Ara I, Kudo T (2007b) / Krasilnikovia gen. nov., a new member of the family / Micromonosporaceae and description of / Krasilnikovia cinnamomea sp. nov. Actinomycetologica 21:1-0 CrossRef
  4. Ara I, Bakir MA, Kudo T (2008a) Transfer of / Catellatospora koreensis Lee et al. 2000 as / Catelliglobosispora koreensis gen. nov., comb. nov. and / Catellatospora tsunoense Asano et al. 1989 as / Hamadaea tsunoensis gen. nov., comb. nov., and emended description of the genus / Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002. Int J Syst Evol Microbiol 58:1950-960 CrossRef
  5. Ara I, Matsumoto A, Bakir MA, Kudo T, Omura S, Takahashi Y (2008b) / Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family / Micromonosporaceae. Int J Syst Evol Microbiol 58:1644-652 CrossRef
  6. Asano K, Kawamoto I (1986) / Catellatospora, a new genus of the / Actinomycetales. Int J Syst Bacteriol 36:512-17 CrossRef
  7. Brosius J, Palmer JL, Kennedy JP, Noller HF (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from / Escherichia coli. Proc Natl Acad Sci USA 75:4801-805 CrossRef
  8. Collins MD (1985) Isoprenoid quinone analyses in bacterial classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic, London, pp 267-84
  9. Couch JN (1950) / Actinoplanes, a new genus of the / Actinomycetales. J Elisha Mitchell Sci Soc 66:87-2
  10. Cross T, Macivera AM, Lacey J (1968) The thermophilic actinomycetes in mouldy hay: / micro polyspora faeni sp. nov. J Gen Microbiol 50:351-59 CrossRef
  11. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-76 CrossRef
  12. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-91 CrossRef
  13. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-16 CrossRef
  14. Goodfellow ML, Stanton J, Simpson KE, Minnikin DE (1990) Numerical and chemical classification of / Actinoplanes and some related actinomycetes. J Gen Microbiol 136:19-6 CrossRef
  15. Gordon RE, Barnett DA, Handerhan JE, Pang C (1974) / Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54-3 CrossRef
  16. Hayakawa M, Nonomura H (1987) Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 65:501-09 CrossRef
  17. Inahashi Y, Matsumoto A, Danbara H, Omura S, Takahashi Y (2010) / Phytohabitans suffuscus gen. nov., sp. nov., an actinomycete of the family / Micromonosporaceae isolated from a plant root. Int J Syst Evol Microbiol 60:2652-658 CrossRef
  18. Jacobson E, Grauville WC, Fogs CE (1958) Color harmony manual, 4th edn. Container Corporation of America, Chicago
  19. Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141-45
  20. Kane WD (1966) A new genus of the / Actinoplanaceae, / Pilimelia, with a description of two species, / Pilimelia terevasa and / Pilimelia anulata. J Elisha Mitchell Sci Soc 82:220-30
  21. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-20 CrossRef
  22. Koch C, Kroppenstedt RM, Rainey FA, Stackebrandt E (1996) 16S ribosomal DNA analysis of the genera / Micromonospora, / Actinoplanes, / Catellatospora, / Catenuloplanes, / Couchioplanes, / Dactylosporangium, and / Pilimelia and emendation of the family / Micromonosporaceae. Int J Syst Bacteriol 46:765-68 CrossRef
  23. Krasil’nikov NA (1938) Ray fungi and related organisms / Actinomycetales. Izdatel’stvo Akademii Nauk SSSR, Moscow
  24. Kroppenstedt RM (1985) Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics (Society for Applied Bacteriology Technical Series), vol 20. Academic, New York, pp 173-99
  25. Kudo T, Nakajima Y, Suzuki K (1999) / Catenuloplanes crispus (Petrolini et al. 1993) comb. nov.: incorporation of the genus / Planopolyspora Petrolini 1993 into the genus / Catenuloplanes Yokota et al. 1993 with an amended description of the genus / Catenuloplanes. Int J Syst Bacteriol 49:1853-860 CrossRef
  26. Lechevalier MP, Lechevalier HA (1980) The chemotaxonomy of actinomycetes. In: Actinomycete Taxonomy (Special Publication no. 6), Arlington: Society for Industrial Microbiology, pp. 277-84
  27. Lechevalier MP, Stern AE, Lechevalier HA (1981) Phospholipids in the taxonomy of actinomycetes. In: Schaal KP, Pulverer G (eds) Actinomycete taxonomy. Gustav Fischer, New York, pp 111-16
  28. Lee SD, Hah YC (2002) Proposal to transfer / Catellatospora ferruginea and -em class="a-plus-plus">Catellatospora ishikariense-to / Asanoa gen. nov. as / Asanoa ferruginea comb. nov. and / Asanoa ishikariensis sp. nov., with emended description of the genus / Catellatospora. Int J Syst Evol Microbiol 52:967-72 CrossRef
  29. Lee DW, Lee SD (2011) / Allocatelliglobosispora scoriae gen. nov., sp. nov., isolated from volcanic ash. Int J Syst Evol Microbiol 61:264-70 CrossRef
  30. Lee YK, Kim HW, Liu CL, Lee HK (2003) A simple method for DNA extraction from marine bacteria that produce extracellular materials. J Microbiol Methods 52:245-50 CrossRef
  31. Li J, Zhao GZ, Zhu WY, Huang HY, Xu LH, Zhang S, Li WJ (2011) / Phytomonospora endophytica gen. nov., sp. nov., isolated from the roots of / Artemisia annua L. Int J Syst Evol Microbiol 61:2967-973 CrossRef
  32. Loqman S, Barka EA, Clément C, Ouhdouch Y (2009) Antagonistic actinomycetes from Moroccan soil to control the grapevine gray mold. World J Microbiol Biotechnol 25:81-1 CrossRef
  33. Maldonado LA, Fenical W, Jensen PR, Kauffman CA, Mincer TJ, Ward AC, Bull AT, Goodfellow M (2005) / Salinispora arenicola gen. nov., sp. nov. and / Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family / Micromonosporaceae. Int J Syst Evol Microbiol 55:1759-766 CrossRef
  34. Mandel M, Marmur J (1968) Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B:195-06 CrossRef
  35. Matsumoto A, Takahashi Y, Shinose M, Seino A, Iwai Y, Omura S (2003) / Longispora albida gen. nov., sp. nov., a novel genus of the family / Micromonosporaceae. Int J Syst Evol Microbiol 53:1553-559 CrossRef
  36. McKerrow J, Vagg S, McKinney T, Seviour EM, Maszenan AM, Brooks P, Seviour RJ (2000) A simple HPLC method for analysing diaminopimelic acid diastereomers in cell walls of Gram-positive bacteria. Lett Appl Microbiol 30:178-82 CrossRef
  37. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JK (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-41 CrossRef
  38. Monciardini P, Cavaletti L, Ranghetti A, Schumann P, Rohde M, Bamonte R, Sosio M, Mezzelani A, Donadio S (2009) Novel members of the family / Micromonosporaceae, / Rugosimonospora acidiphila gen. nov., sp. nov. and / Rugosimonospora africana sp. nov. Int J Syst Evol Microbiol 59:2752-758 CrossRef
  39. ?rskov J (1923) Investigations into the morphology of the ray fungi. Levin and Munksgaard, Copenhagen
  40. Qin S, Li J, Zhang YQ, Zhu WY, Zhao GZ, Xu LH, Li WJ (2009) / Plantactinospora mayteni gen. nov., sp. nov., a member of the family / Micromonosporaceae. Int J Syst Evol Microbiol 59:2527-533 CrossRef
  41. Rheims H, Schumann P, Rohde M, Stackebrandt E (1998) / Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family / Micromonosporaceae. Int J Syst Bacteriol 48:1119-127 CrossRef
  42. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-25
  43. Shirling EB, Gottlieb D (1966) Methods for characterization of / Streptomyces species. Int J Syst Bacteriol 16:313-40 CrossRef
  44. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, / Actinobacteria classis nov. Int J Syst Bacteriol 47:479-91 CrossRef
  45. Tamura T, Nakagaito Y, Nishii T, Hasegawa T, Stackebrandt E, Yokota A (1994) A new genus of the order / Actinomycetales, / Couchioplanes gen. nov., with descriptions of / Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and / Couchioplanes caeruleus subsp. / azureus subsp. nov. Int J Syst Bacteriol 44:193-03 CrossRef
  46. Tamura T, Hayakawa M, Hatano K (1997) A new genus of the order / Actinomycetales, / Spirilliplanes gen. nov., with description of / Spirilliplanes yamanashiensis sp. nov. Int J Syst Bacteriol 47:97-02 CrossRef
  47. Tamura T, Hayakawa M, Hatano K (2001) A new genus of the order / Actinomycetales, / Virgosporangium gen. nov., with descriptions of / Virgosporangium ochraceum sp. nov. and / Virgosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51:1809-816 CrossRef
  48. Tamura T, Hatano K, Suzuki K (2006) A new genus of the family / Micromonosporaceae, / Polymorphospora gen. nov., with description of / Polymorphospora rubra sp. nov. Int J Syst Evol Microbiol 56:1959-964 CrossRef
  49. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-739 CrossRef
  50. Thawai C, Tanasupawat S, Itoh T, Kudo T (2006) / Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family / Micromonosporaceae. Int J Syst Evol Microbiol 56:1789-794 CrossRef
  51. Thawai C, Tanasupawat S, Suwanborirux K, Kudo T (2010) / Actinaurispora siamensis gen. nov., sp. nov., a new member of the family / Micromonosporaceae. Int J Syst Evol Microbiol 60:1660-666 CrossRef
  52. Thiemann JE, Pagani H, Beretta G (1967) A new genus of the / Actinoplanaceae: / Dactylosporangium, gen. nov. Arch Mikrobiol 58:42-2 CrossRef
  53. Uchida K, Kudo T, Suzuki K, Nakase T (1999) A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45:49-6 CrossRef
  54. Wiese J, Jiang Y, Tang SK, Thiel V, Schmaljohann R, Xu LH, Jiang CL, Imhoff JF (2008) A new member of the family / Micromonosporaceae, / Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol 58:1324-331 CrossRef
  55. Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, Sackin MJ (1983) Numerical classification of / Streptomyces and related genera. J Gen Microbiol 129:1743-813
  56. Wu C, Lu X, Qin M, Wang Y, Ruan J (1989) Analysis of menaquinone compound in microbial cells by HPLC. Microbiology 16:176-78
  57. Xiang WS, Liu CX, Wang XJ, Du J, Xi LJ, Huang Y (2011) / Actinoalloteichus nanshanensis sp. nov., isolated from the rhizosphere of a fig tree ( / Ficus religiosa). Int J Syst Evol Microbiol 61:1165-169 CrossRef
  58. Xie QY, Wang C, Wang R, Qu Z, Lin HP, Hong K (2011) / Jishengella endophytica gen. nov., sp. nov., a new member of the family / Micromonosporaceae. Int J Syst Evol Microbiol 61:1153-159 CrossRef
  59. Yokota A, Tamura T, Hasegawa T, Huang LH (1993) / Catenuloplanes japonicas gen. nov., sp. nov., nom. rev., a new genus of the order / Actinomycetales. Int J Syst Bacteriol 43:805-12 CrossRef
  60. Zhi XY, Li WJ, Stackebrandt E (2009) An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class / Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589-08 CrossRef
  
• 作者单位：Feiyu Jia (1)
  Chongxi Liu (1)
  Xiangjing Wang (1)
  Junwei Zhao (1)
  Qianfeng Liu (1)
  Ji Zhang (1)
  Ruixia Gao (1)
  Wensheng Xiang (1)
  
  1. School of Life Science, Northeast Agricultural University, No. 59 Mucai Street, Xiangfang District, Harbin, 150030, People’s Republic of China
  
• ISSN：1572-9699

文摘

A novel endophytic actinomycete, designated strain NEAU-J3T, was isolated from soybean root (Glycine max (L.) Merr) and characterized using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences suggested that strain NEAU-J3T fell within the family Micromonosporaceae. The strain was observed to form an extensively branched substrate mycelium, which carried non-motile oval spores with a smooth surface. The cell walls of strain NEAU-J3T were determined to contain meso-diaminopimelic acid and galactose, ribose and glucose were detected as whole-cell sugars. The major menaquinones were determined to be MK-9(H4) and MK-9(H6). The phospholipids detected were phosphatidylcholine and phosphatidylethanolamine. The major cellular fatty acids were determined to be C16:0, C18:1 ω9c, C18:0, C17:0, C17:1 ω7c, anteiso-C17:0, C16:1 ω7c and C15:0. The DNA G?+?C content was 62.5?mol%. On the basis of the morphological and chemotaxonomic characteristics, phylogenetic analysis and characteristic patterns of 16S rRNA gene signature nucleotides, strain NEAU-J3T is considered to represent a novel species of a new genus within the family Micromonosporaceae, for which the name Wangella harbinensis gen. nov., sp. nov. is proposed. The type strain of Wangella harbinensis is strain NEAU-J3T (=CGMCC 4.7039T?=?DSM 45747T).