Litorilituus sediminis gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China
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- 作者：Yan Wang (1)
Rui Zhao (2)
Shiqi Ji (2)
Zhao Li (2)
Tong Yu (2)
Bingyu Li (2)
Xiaochong Shi (2)
Xiao-Hua Zhang (2) - 关键词：Litorilituus sediminis gen. nov. sp. nov. ; Taxonomy ; Amphioxus breeding zone ; 16S rRNA
- 刊名：Antonie van Leeuwenhoek
- 出版年：2013
- 出版时间：September 2013
- 年：2013
- 卷：104
- 期：3
- 页码：423-430
- 全文大小：381KB
- 参考文献：1. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1995) Short protocols in molecular biology: a compendium of methods from current protocols in molecular biology, 3rd edn. Wiley, New York
2. Beveridge TJ, Lawrence JR, Murray RGE (2007) Sampling and staining for light microscopy. In: Reddy A, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds) Methods for general and molecular microbiology. ASM, Washington, pp 19-3
3. Breznak JA, Costilow RN (1994) Physicochemical factors in growth. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, pp 137-54
4. Choi EJ, Kwon HC, Koh HY, Kim YS, Yang HO (2010) / Colwellia / asteriadis sp. nov., a marine bacterium isolated from the starfish / Asterias / amurensis. Int J Syst Evol Microbiol 60:1952-957 CrossRef
5. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-261 CrossRef
6. Garrity GM (2005) Bergey’s Manual of Systematic Bacteriology. In: Castenholz RW (ed) The / Proteobacteria, vol 2, 2nd edn. Springer, New York
7. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-8
8. Hosoya S, Adachi K, Kasai H (2009) / Thalassomonas actiniarum sp. nov. and / Thalassomonas haliotis sp. nov., isolated from marine animals. Int J Syst Evol Microbiol 59:686-90 CrossRef
9. Hu ZY, Li Y (2007) / Pseudidiomarina sediminum sp. nov., a marine bacterium isolated from coastal sediments of Luoyuan Bay in China. Int J Syst Evol Microbiol 57:2572-577 CrossRef
10. Ivanova EP, Flavier S, Christer R (2004) Phylogenetic relationships among marine / Alteromonas-like proteobacteria: emended description of the family / Alteromonadaceae and proposal of / Pseudoalteromonadaceae fam. nov., / Colwelliaceae fam. nov., / Shewanellaceae fam. nov., / Moritellaceae fam. nov., / Ferrimonadaceae fam. nov., / Idiomarinaceae fam. nov. and / Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54:1773-788 CrossRef
11. Jean WD, Shieh WY, Liu TY (2006) / Thalassomonas agarivorans sp. nov., a marine agarolytic bacterium isolated from shallow coastal water of An-Ping Harbour, Taiwan, and emended description of the genus / Thalassomonas. Int J Syst Evol Microbiol 56:1245-250 CrossRef
12. Jung SY, Oh TK, Yoon JH (2006) / Colwellia aestuarii sp. nov., isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 56:33-7 CrossRef
13. Macián MC, Ludwig W, Schleifer KH, Garay E, Pujalte MJ (2001) / Thalassomonas viridans gen. nov., sp. nov., a novel marine cproteo bacterium. Int J Syst Evol Microbiol 51:1283-289 CrossRef
14. Mesbah M, Premachandran U, Whitman WB (1989) Precisemeasurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-67 CrossRef
15. Nogi Y, Hosoya S, Kato C, Horikoshi K (2004) / Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench. Int J Syst Evol Microbiol 54:1627-631 CrossRef
16. Park S, Choi WC, Oh TK, Yoon JH (2011) / Thalassomonas / agariperforans sp. nov., an agarolytic bacterium isolated from marine sand. Int J Syst Evol Microbiol 61:2573-576 CrossRef
17. Suzuki MT, Rappé MS, Haimberger ZW, Winfield H, Adair N, Str?bel J, Giovannoni SJ (1997) Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Appl Environ Microbiol 63:983-89
18. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis (MEGA) using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-739 CrossRef
19. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-882 CrossRef
20. Thompson FL, Barash Y, Sawabe T, Sharon G, Swings J, Rosenberg E (2006) / Thalassomonas loyana sp. nov., a causative agent of the white plague-like disease of corals on the Eilat coral reef. Int J Syst Evol Microbiol 56:365-68 CrossRef
21. Tindall BJ, Sikorski J, Smibert RM, Krieg NR (2007) Phenotypic characterization and the principles of comparative systematics. In: Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds) Methods for general and molecular microbiology. American Society for Microbiology, Washington, pp 330-93
22. Wayne LG, Brenner DJ, Colwell RR et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-64 CrossRef
23. Xie CH, Yokota A (2003) Phylogenetic analysis of / Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49:345-49 CrossRef
24. Yi H, Bae KS, Chun J (2004) / Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54:377-80 CrossRef
25. Yu Y, Li HR, Zeng YX (2011) / Colwellia / chukchiensis sp. nov., a psychrotolerant bacterium isolated from the Arctic Ocean. Int J Syst Evol Microbiol 61:850-53 CrossRef
26. Zhang DC, Yu Y, Xin YH, Liu HC, Zhou PJ, Zhou YG (2008) / Colwellia polaris sp. nov., a psychrotolerant bacterium isolated from Arctic sea ice. Int J Syst Evol Microbiol 58:1931-934 CrossRef - 作者单位：Yan Wang (1)
Rui Zhao (2)
Shiqi Ji (2)
Zhao Li (2)
Tong Yu (2)
Bingyu Li (2)
Xiaochong Shi (2)
Xiao-Hua Zhang (2)
1. Department of Life Sciences and Technology, Xinxiang Medical University, 601 Jinsui Avenue, Xinxiang, 453003, People’s Republic of China
2. College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao, 266003, People’s Republic of China
文摘
A Gram-negative, non-spore-forming, catalase- and oxidase-positive, aerobic, curved-rod shaped bacterium with polar or subpolar flagellum, designated strain JYr2T, was isolated from a sediment sample collected from an amphioxus breeding zone in the coastal region of Qingdao, China. The organism grew optimally at 37?°C, pH 8- and in the presence of 3?% (w/v) NaCl or 3-?% sea salts (w/v; Sigma). Salt was required for growth. The strain contained isoprenoid quinone 8 (Q-8, 100?%) as the predominant isoprenoid quinone and C16:0 (24.1?%) and C16:1 ω7c and/or C16:1 ω6c (35.8?%) as major fatty acids. Phosphatidylethanolamine, phosphatidylglycerol, aminophospholipid (PN) and two aminolipid (AL1, AL2) were the major constituents of the phospholipids. A phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JYr2T formed a distinct evolutionary lineage within the family Colwelliaceae. It showed <95.0?% sequence similarities to all validly published species in the family Colwelliaceae, except 95.2?% to Thalassomonas viridans DSM 13754T and 95.0?% to Colwellia polaris JCM 537T. The G+C content of the DNA was 42.7?mol%. On the basis of the polyphasic taxonomic study, strain JYr2T (=?CGMCC 1.10794T?=?JCM 17549T) was considered to represent a novel genus and species in Gammaproteobacteria, for which the name Litorilituus sediminis gen. nov. sp. nov. was proposed.