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Comparative Diversity Analysis of Gut Microbiota in Two Different Human Flora-Associated Mouse Strains
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  • 作者:Xiaojing Zhang (1)
    Benhua Zeng (2)
    Zhiwei Liu (1)
    Zhenlin Liao (1)
    Wenxai Li (2)
    Hong Wei (2)
    Xiang Fang (1)
  • 关键词:Human flora ; associated mice ; C57BL/6J ; KM ; DGGE ; Gut microbiota
  • 刊名:Current Microbiology
  • 出版年:2014
  • 出版时间:September 2014
  • 年:2014
  • 卷:69
  • 期:3
  • 页码:365-373
  • 全文大小:1,830 KB
  • 参考文献:1. Round JL, Mazmanian SK (2009) The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol 9(5):313鈥?23. doi:10.1038/nri2515 CrossRef
    2. Sanz Y, Santacruz A, Gauffin P (2010) Probiotics in the defence and metabolic balance of the organism: gut microbiota in obesity and metabolic disorders. P Nutr Soc 69:434鈥?41. doi:10.1017/S0029665110001813 CrossRef
    3. Xu J, Gordon JI (2003) Honor thy symbionts. P Natl Acad Sci Usa 100(18):10452鈥?0459. doi:10.1073/pnas.1734063100 CrossRef
    4. Martens EC, Koropatkin NM, Smith TJ, Gordon JI (2009) Complex glycan catabolism by the human gut microbiota: the Bacteroidetes sus-like paradigm. J Biol Chem 284(37):24673鈥?4677. doi:10.1074/jbc.R109.022848 CrossRef
    5. Perrin-Guyomard A, Poul JM, Laurentie M, Sanders P, Fern谩ndez AH, Bartholomew M (2006) Impact of ciprofloxacin in the human-flora-associated (HFA) rat model: comparison with the HFA mouse model. Regul Toxicol Pharm 45(1):66鈥?8. doi:10.1016/j.yrtph.2006.02.002 CrossRef
    6. Perrin-Guyomard A, Poul JM, Corpet DE, Sanders P, Fern谩ndez AH, Bartholomew M (2005) Impact of residual and therapeutic doses of ciprofloxacin in the human-flora-associated mice model. Regul Toxicol Pharm 42(2):151鈥?60. doi:10.1016/j.yrtph.2005.03.001 CrossRef
    7. Gootenberg DB, Turnbaugh PJ (2011) Companion animals symposium: humanized animal models of the microbiome. J Anim Sci 89(5):1531鈥?537. doi:10.2527/jas.2010-3371 CrossRef
    8. Pang XY, Hua XG, Yang Q, Ding DH, Che CY, Cui L, Jia W, Bucheli P, Zhao LP (2007) Inter-species transplantation of gut microbiota from human to pigs. ISME J 1(2):156鈥?62. doi:10.1038/ismej.2007.23 CrossRef
    9. Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI (2009) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 1(6): 6ra14. doi:10.1126/scitranslmed.3000322
    10. Turnbaugh PJ, Hamady M, Yatsunenko T et al (2009) A core gut microbiome in obese and lean twins. Nature 457(7228):480鈥?87. doi:10.1038/nature07540 CrossRef
    11. Huws SA, Edwards JE, Kim EJ, Scollan ND (2007) Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems. J Microbiol Meth 70(3):565鈥?69. doi:10.1016/j.mimet.2007.06.013 CrossRef
    12. Gafan GP, Lucas VS, Roberts GJ, Petrie A, Wilson M, Spratt DA (2005) Statistical analyses of complex denaturing gradient gel electrophoresis profiles. J Clin Microbiol 43(8):3971鈥?978. doi:10.1128/JCM.43.8.3971-3978.2005 CrossRef
    13. Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microb 59(3):695鈥?00
    14. Thompson JR, Marcelino LA, Polz MF (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 鈥榬econditioning PCR鈥? Nucleic Acids Res 30(9):2083鈥?088. doi:10.1093/nar/30.9.2083 CrossRef
    15. Leung K, Topp E (2001) Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol Ecol 38:169鈥?77. doi:10.1111/j.1574-6941.2001.tb00895.x CrossRef
    16. Yuan J, Zeng B, Niu R, Tang H, Li W, Zhang Z, Wei H (2011) The development and stability of the genus Bacteriodes from human gut microbiota in HFA mice model. Curr Microbiol 62(4):1107鈥?112. doi:10.1007/s00284-010-9833-9 CrossRef
    17. Boon N, De Windt W, Verstraete W et al (2002) Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol Ecol 39(2):101鈥?12. doi:10.1111/j.1574-6941.2002.tb00911.x
    18. Backhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI (2005) Host-bacterial mutualism in the human intestine. Science 307(5717):1915鈥?920. doi:10.1126/science.1104816 CrossRef
    19. Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI (2005) Obesity alters gut microbial ecology. P Natl Acad Sci Usa 102(31):11070鈥?1075. doi:10.1073/pnas.0504978102 CrossRef
    20. Seksik P, Rigottier-Gois L, Gramet G, Sutren M, Pochart P, Marteau P, Jian R, Dor茅 J (2003) Alterations of the dominant faecal bacterial groups in patients with Crohn鈥檚 disease of the colon. Gut 52(2):237鈥?42. doi:10.1136/gut.52.2.237 CrossRef
    21. Liu C, Finegold SM, Song Y, Lawson PA (2008) Reclassification of / Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as / Blautia coccoides gen. nov., comb. nov., / Blautia hansenii comb. nov., / Blautia hydrogenotrophica comb. nov., / Blautia luti comb. nov., / Blautia producta comb. nov., / Blautia schinkii comb. nov. and description of / Blautia wexlerae sp. nov., isolated from human faeces. Int J Syst Evol Micr 58(Pt8): 1896鈥?902. doi:10.1099/ijs.0.65208-0
    22. Kibe R, Sakamoto M, Yokota H, Ishikawa H, Aiba Y, Koga Y, Benno Y (2005) Movement and fixation of intestinal microbiota after administration of human feces to germfree mice. Appl Environ Microbiol 71(6):3171鈥?178. doi:10.1128/AEM.71.6.3171-3178.2005 CrossRef
    23. Gill SR, Pop M, DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE (2006) Metagenomic analysis of the human distal gut microbiome. Science 312(5778):1355鈥?359. doi:10.1126/science.1124234 CrossRef
  • 作者单位:Xiaojing Zhang (1)
    Benhua Zeng (2)
    Zhiwei Liu (1)
    Zhenlin Liao (1)
    Wenxai Li (2)
    Hong Wei (2)
    Xiang Fang (1)

    1. College of Food Science, South China Agricultural University, Guangzhou, 510642, China
    2. Department of Laboratory Animal Science, College of Basic Medicine Science, Third Military Medical University, Chongqing, 400038, China
  • ISSN:1432-0991
文摘
The Kunming (KM) mouse is a closed colony mouse strain widely used in Chinese pharmacology, toxicology, and microbiology research laboratories. However, few studies have examined human flora-associated (HFA) microbial communities in KM mice. In this study, HFA models were built from germ-free KM and C57BL/6J mouse strains, and gut microbial diversity was analyzed by denaturing gradient gel electrophoresis (DGGE) and DNA sequencing. We found that the two strains of HFA mice were significantly different based on the UPGMA dendrogram and the Richness index, but dice similarity coefficients of mouse replicates were not significantly different between HFA-KM and HFA-C57BL/6J. Most of the dominant phyla of human gut microflora could be transferred into the guts of the two mouse strains. However, the predominant genus that formed in HFA-KM was Clostridium sp. and that in HFA-C57BL/6J was Blautia sp. These results imply that genotypes difference between the two mice strains is a critical factor in shaping the intestinal microflora. However, genetic differences of individuals within KM mouse populations failed to lead to individual difference in microflora. Successful generation of HFA-KM mice will facilitate studies examining how diet affects gut microbial structure, and will enable comparative studies for uncovering genetic factors that shape gut microbial communities.

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