Comprehensive molecular evolution and gene expression analyses of the ABC1 atypical kinase family in rice and Arabidopsis
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- 作者：Qingsong Gao (1)
Hui Zang (2)
Yun Gao (3)
Zefeng Yang (3)
Yong Zhou (3)
Yuming Luo (1)
Yuan Yuan (3)
Yifan Wang (3)
Liming Yang (1)
Xing Xu (3)
Jun Wang (4)
Chenwu Xu (3)
Guohua Liang (3)
1. Jiangsu Key Laboratory for Eco-Agricultural Biotechnology around Hongze Lake ; Huaiyin Normal University ; Huai鈥檃n ; 223300 ; China
2. Institute of Agricultural Sciences in Coastal Area of Jiangsu Province ; Yan Chen ; 224000 ; China
3. Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology ; Yangzhou University ; Yangzhou ; 225009 ; China
4. Institute of Food Crops ; Jiangsu Academy of Agricultural Sciences ; Nanjing ; 210014 ; China - 关键词：ABC1 gene ; Atypical protein kinase ; Molecular evolution ; Gene expression ; Coexpression analysis ; Oryza sativa
- 刊名：Journal of Plant Biochemistry and Biotechnology
- 出版年：2015
- 出版时间：April 2015
- 年：2015
- 卷：24
- 期：2
- 页码：210-217
- 全文大小：616 KB
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- 出版者：Springer India
- ISSN：0974-1275
文摘
The ABC1 atypical kinases (aPKs) have been extensively studied in bacteria, yeast and human, where their mutation causes a deficiency of ubiquinone, an isoprenoid compound in the respiratory electron transfer chain. Considerably less is known, however, about their evolution and function in higher plants. In this study, we identified 16 ABC1-domain containing genes from model plant rice by comprehensive genome analysis and gene cloning. Detection of positive selection showed that purifying selection was the major force underlying the evolution of most rice and Arabidopsis ABC1s. However, the expression profiles of plant ABC1s appear to have diverged based on microarray data analysis and realtime PCR; some of them are primarily expressed in developing leaves, some in stamens and/or mature pollen, whereas others in diverse tissues and organs. The possible functions of plant ABC1s were identified using genome-wide coexpression analysis. This analysis suggested that many of them might be involved in the regulation of isoprenoid biosynthesis. In conclusion, the plant ABC1 aPKs, which harbor distinct expression patterns, might have conserved functions in modulating isoprenoid metabolism.