Complete nucleotide sequence of little cherry virus 1 (LChV-1) infecting sweet cherry in China

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• 作者：Jiawei Wang ; Dongzi Zhu ; Yue Tan ; Xiaojuan Zong ; Hairong Wei…
• 刊名：Archives of Virology
• 出版年：2016
• 出版时间：March 2016
• 年：2016
• 卷：161
• 期：3
• 页码：749-753
• 全文大小：422 KB
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• 作者单位：Jiawei Wang (1)
  Dongzi Zhu (1)
  Yue Tan (1)
  Xiaojuan Zong (1)
  Hairong Wei (1)
  Rosemarie W. Hammond (2)
  Qingzhong Liu (1)
  
  1. Key Laboratory for Fruit Biotechnology Breeding of Shandong Province, Shandong Institute of Pomology, Taian, 271000, Shandong, People’s Republic of China
  2. US Department of Agriculture, ARS, Molecular Plant Pathology Laboratory, Room 214, Building 004 BARC West, Beltsville, MD, 20705, USA
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Virology
  Medical Microbiology
  Infectious Diseases
  
• 出版者：Springer Wien
• ISSN：1432-8798

文摘

Little cherry virus 1 (LChV-1), associated with little cherry disease (LCD), has a significant impact on fruit quality of infected sweet cherry trees. We report the full genome sequence of an isolate of LChV-1 from Taian, China (LChV-1-TA), detected by small-RNA deep sequencing and amplified by overlapping RT-PCR. The LChV-1-TA genome was 16,932 nt in length and contained nine open reading frames (ORFs), with sequence identity at the overall genome level of 76 %, 76 %, and 78 % to LChV-1 isolates Y10237 (UW2 isolate), EU715989 (ITMAR isolate) and JX669615 (V2356 isolate), respectively. Based on the phylogenetic analysis of HSP70h amino acid sequences of Closteroviridae family members, LChV-1-TA was grouped into a well-supported cluster with the members of the genus Velarivirus and was also closely related to other LChV-1 isolates. This is the first report of the complete nucleotide sequence of LChV-1 infecting sweet cherry in China.