Genome-wide identification and expression analysis of auxin response factor(ARF) gene family in strawberry(Fragaria vesca)
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摘要
Auxin signaling plays a significant role in the whole process of plant growth and development from embryogenesis to senescence. Auxin response factors(ARFs) are reported to regulate the expression of auxin response genes by binding to auxin response elements. ARF is the most critical transcription factor family which has been released in most species, but few reports in strawberry. In this study, the structure characterization of 12 FvARF genes in strawberry, their expression patterns at different development stages, different organizations, and different indole-3-acetic acid(IAA) treatments were analyzed. The expression of 12 FvARFs was found in all experiment tissues and showed almost the same trend during fruit development. All FvARFs respond to the treatment of IAA. Our study provides comprehensive information on ARF family in strawberry, including gene structures, chromosome locations, phylogenetic relationships and expression patterns. The information on FvARF genes paves the way for future research on strawberry ARF genes.
Auxin signaling plays a significant role in the whole process of plant growth and development from embryogenesis to senescence. Auxin response factors(ARFs) are reported to regulate the expression of auxin response genes by binding to auxin response elements. ARF is the most critical transcription factor family which has been released in most species, but few reports in strawberry. In this study, the structure characterization of 12 FvARF genes in strawberry, their expression patterns at different development stages, different organizations, and different indole-3-acetic acid(IAA) treatments were analyzed. The expression of 12 FvARFs was found in all experiment tissues and showed almost the same trend during fruit development. All FvARFs respond to the treatment of IAA. Our study provides comprehensive information on ARF family in strawberry, including gene structures, chromosome locations, phylogenetic relationships and expression patterns. The information on FvARF genes paves the way for future research on strawberry ARF genes.
Auxin signaling plays a significant role in the whole process of plant growth and development from embryogenesis to senescence. Auxin response factors(ARFs) are reported to regulate the expression of auxin response genes by binding to auxin response elements. ARF is the most critical transcription factor family which has been released in most species, but few reports in strawberry. In this study, the structure characterization of 12 FvARF genes in strawberry, their expression patterns at different development stages, different organizations, and different indole-3-acetic acid(IAA) treatments were analyzed. The expression of 12 FvARFs was found in all experiment tissues and showed almost the same trend during fruit development. All FvARFs respond to the treatment of IAA. Our study provides comprehensive information on ARF family in strawberry, including gene structures, chromosome locations, phylogenetic relationships and expression patterns. The information on FvARF genes paves the way for future research on strawberry ARF genes.
引文
Ariani A,Gepts P.2015.Genome-wide identification and characterization of aquaporin gene family in common bean(Phaseolus vulgaris L).Molecular Genetics and Genomics,290,1771-1785.
Chandler J W.2016.Auxin response factors.Plant Cell and Environment,39,1014-1028.
Corso M,Vannozzi A,Ziliotto F,Zouine M,Maza E,Nicolato T,Vitulo N,Meggio F,Valle G,Bouzayen M,Müller M,Munné-Bosch S,Lucchin M,Bonghi C.2016.Grapevine rootstocks differentially affect the rate of ripening and modulate auxinrelated genes in Cabernet Sauvignon berries.Front Plant Science,7,69.
Dharmasiri N,Estelle M.2004.Auxin signaling and regulated protein degradation.Plant Science,9,1360-1385.
Die J V,Gil J,Millan T.2018.Genome-wide identification of the auxin response factor gene family in Cicer arietinum.BMC Genomics,19,301.
Du H,Wu N,Fu J,Wang S,Li X H,Xiao J H.2012.A GH3 family member,OsGH3-2,modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.Journal of Experimental Botany,63,6467-6480.
Estrada-Johnson E,Csukasi F,Pizarro C M,Vallarino J G,Kiryakova Y,Vioque A,Brumos J,Medina-Escobar N,Botella M A,Alonso J M,Fernie A R,Sánchez-Sevilla JF,Osorio S,Valpuesta V.2017.Transcriptomic analysis in strawberry fruits reveals active auxin biosynthesis and signaling in the ripe receptacle.Front Plant Science,8,889.
Fahlgren N,Montgomery T A,Howell M D,Allen E,Dvorak S K,Alexander A L,Carrington J C.2006.Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis.Current Biology,16,939-944.
Garcia D,Collier S A,Byrne M E,Martienssen R A.2006.Specification of leaf polarity in Arabidopsis via the transacting siRNA pathway.Current Biology,16,933-938.
Ghelli R,Brunetti P,Napoli N,De Paolis A,Cecchetti V,Tsuge T,Serino G,Matsui M,Mele G,Rinaldi G,Palumbo G A,Barozzi F,Costantino P,Cardarelli M.2018.Anewly identified flower-specific splice variant of AUXINRESPONSE FACTOR8 regulates stamen elongation and endothecium lignification in Arabidopsis.The Plant Cell,30,620-637.
Goetz M,Vivian-Smith A,Johnson S D,Koltunow A M.2006.AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis.The Plant Cell,18,1873-1886.
Ha C V,Le D T,Nishiyama R,Watanabe Y,Sulieman S,Tran U T,Mochida K,Dong N V,Shinozaki K Y,Shinozaki K,Tran L S P.2013.The auxin response factor transcription factor family in soybean:Genome-wide identification and expression analyses during development and water stress.DNA Research,20,511-524.
Hao Y,Hu G J,Breitel D,Liu M C,Mila I,Frasse P.2015.Auxin response factor SlARF2 is an essential component of the regulatory mechanism controlling fruit ripening in tomato.PLoS Genetics,11,e1005649.
Hardtke C S,Berleth T.1998.The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development.EMBOJournal,17,1405-1411.
Harper R M,Stowe-Evans E L,Luesse D R,Muto H,Tatematsu K,Watahiki M K,Yamamoto K,Liscum E.2000.The NPH4locus encodes the auxin response factor ARF7,a conditional regulator of differential growth in aerial Arabidopsis tissue.The Plant Cell,12,757-770.
Hu W,Zuo J,Yan Y,Wei Y X,Liu J H,Li M Y.2015.The auxin response factor gene family in banana:Genome-wide identification and expression analyses during development,ripening,and abiotic stress.Front Plant Science,6,742.
Hunter C,Willmann M R,Wu G,Yoshikawa M,Gutierrez-Nava D L L,Poethig S R.2006.Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis.Development,133,2973-2981.
Jong M D,Wolters-Arts M,Feron R,Mariani C,Vriezen W H.2009.The Solanum lycopersicum auxin response factor 7(SlARF7)regulates auxin signaling during tomato fruit set and development.The Plant Journal,57,160-170.
Kalluri U C,Difazio S P,Brunner A M,Tuskan G A.2007.Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.BMC Plant Biology,7,59.
Ljung K.2013.Auxin metabolism and homeostasis during plant development.Development,140,943-950.
Kumar R,Tyagi A K,Sharma A K.2011.Genome-wide analysis of auxin response factor(ARF)gene family from tomato and analysis of their role in flower and fruit development.Molecular Genetics and Genomics,285,245-260.
Li S B,OuYang W Z,Hou X J,Xie L L,Hu C G,Zhang J Z.2015.Genome-wide identification,isolation and expression analysis of auxin response factor(ARF)gene family in sweet orange(Citrus sinensis).Front Plant Science,6,119.
Liu K D,Yuan C C,Li H L,Lin W H,Yang Y J,Shen C J,Zheng X L.2015.Genome-wide identification and characterization of auxin response factor(ARF)family genes related to flower and fruit development in papaya(Carica papaya L).BMCGenomics,16,901.
Liu N,Wu S,Houten J V,Wang Y,Ding B,Fei Z,Clarke T H,Reed J W,Knaap E V D.2014.Down-regulation of AUXINRESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.Journal of Experimental Botany,65,2507-2520.
Luo X C,Sun M H,Xu R R,Shu H R,Wang J W,Zhang S Z.2014.Genome-wide identification and expression analysis of the ARF gene family in apple.Journal of Genetics,93,785-797.
Mallory A C,Bartel D P,Bartel B.2005.MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17is essential for proper development and modulates expression of early auxin response genes.The Plant Cell,17,1360-1375.
Nagpal P,Ellis C M,Weber H,Ploense S E,Barkawi L S,Guilfoyle T J,Hagen G,Alonso J M,Cohen J D,Farmer E E,Ecker J R,Reed J W.2005.Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation.Development,132,4107-4118.
Okushima Y,Fukaki H,Onoda M,THeologis A,Tasaka M.2007.ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis.The Plant Cell,19,118-130.
Okushima Y,Overvoorde P J,Arima K,Alonso J M,Chan A,Chang C,Ecker J R,Hughes B,Lui A,Nguyen D,Onodera C,Quach H,Smith A,Yu G X,Theologis A.2005.Functional genomic analysis of the AUXIN RESPONSE FACTORgene family members in Arabidopsis thaliana:Unique and overlapping functions of ARF7 and ARF19.The Plant Cell,17,444-463.
Paterson A H,Bowers J E,Chapman B A.2004.Ancient polyploidization predating divergence of the cereals,and its consequences for comparative genomics.Proceedings of the National Academy of Sciences of the United States of America,101,9903-9908.
Remington D L,Vision T J,Guilfoyle T J,Reed J W.2004.Contrasting modes of diversification in the Aux/IAA and ARF gene families.Plant Physiology,135,1738-1752.
Ren Z X,Liu R Y,Gu W T,Dong X C.2017.The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.Plant Science,256,103-111.
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y.2010.Functional analysis of the structural domain of ARF proteins in rice(Oryza sativa L).Journal of Experimental Botany,61,3971-3981.
Shen C J,Yue R Q,Sun T,Zhang L,Xu L,Tie S G,Wang H Z,Yang Y J.2015.Genome-wide identification and expression analysis of auxin response factor gene family in Medicago truncatula.Frontiers in Plant Science,6,75.
Shi M,Hu X,Wei Y,Hou X,Yuan X,Liu J.2017.Genome-wide profiling of small RNAs and degradome revealed conserved regulations of miRNAs on auxin-responsive genes during fruit enlargement in peaches.International Journal of Molecular Sciences,18,2599.
Shimizu-Mitao Y,Kakimoto T.2014.Auxin sensitivities of all Arabidopsis Aux/IAAs for degradation in the presence of every TIR1/AFB.Plant and Cell Physiology,55,1450-1459.
Shulaev V,Sargent D J,Crowhurst R N,Mockler T C,Folkerts O,Delcher A L.2011.The genome of woodland strawberry(Fragaria vesca).Nature Genetics,43,109-116.
Sun J H,Liu X J,Yang B T,Slovin J,Chen P.2014.Profiling polyphenols of two diploid strawberry(Fragaria vesca)inbred lines using UHPLC-HRMS.Food Chemistry,146,289-298.
Sun R R,Wang K B,Guo T L,Jones D C,Cobb J L,Zhang B H,Wang Q L.2015.Genome-wide identification of auxin response factor(ARF)genes and its tissue-specific prominent expression in Gossypium raimondii.Functional&Integrative Genomics,15,481-493.
Tamura K,Peterson D,Peterson N,Stecher G,Nei M,Kumar S.2011.MEGA5:Molecular evolutionary genetics analysis using maximum likelihood,evolutionary distance,and maximum parsimony methods.Molecular Biology Evolution,28,2731-2739.
Tiwari S B,Hagen G,Guilfoyle T.2003.The roles of auxin response factor domains in auxin-responsive transcription.The Plant Cell,15,533-543.
Uchiumi T,Okamoto T.2010.Rice fruit development is associated with an increased IAA content in pollinated ovaries.Planta,232,579-592.
Ulmasov T,Hagen G,Guilfoyle T J.1999.Activation and repression of transcription by auxin response factors.Proceedings of the National Academy of Sciences of the United States of America,96,5844-5849.
Wang D,Pei K,Fu Y,Sun Z,Li S,Liu H.2007.Genome-wide analysis of the auxin response factors(ARF)gene family in rice(Oryza sativa).Gene,394,13-24.
Wang J W,Wang L J,Mao Y B,Cai W J,Xue H W,Chen X Y.2005.Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis.The Plant Cell,17,2204-2216.
Wang S K,Zhang S N,Sun C D,Xu Y X,Chen Y,Yu C L,Qian Q,Jiang D A,Qi Y H.2014.Auxin response factor(OsARF12),a novel regulator for phosphate homeostasis in rice(Oryza sativa).New Phytologist,201,91-103.
Wang Y J,Deng D X,Shi Y T,Miao N,Bian Y L,Yin Z T.2012.Diversification,phylogeny and evolution of auxin response factor(ARF)family:Insights gained from analyzing maize ARF genes.Molecular Biology Reports,39,2401-2415.
Wang Y N,Li K X,Chen L,Zou Y M,Liu H P,Tian,Y P,Li D X,Wang R,Zhao F,Ferguson B J,Gresshoff P M,Li X.2015.MicroRNA167-directed regulation of the auxin response factors GmARF8a and GmARF8b is required for soybean nodulation and lateral root development.Plant Physiology,168,984-999.
Wei W,Hu Y,Cui M Y,Han Y T,Gao K,Feng J Y.2016.Identification and transcript analysis of the TCP transcription factors in the diploid woodland strawberry Fragaria vesca.Front Plant Science,7,1937.
Wu M F,Tian Q,Reed J W.2006.Arabidopsis microRNA167controls patterns of ARF6 and ARF8 expression,and regulates both female and male reproduction.Development,133,4211-4218.
Wu J,Wang F Y,Cheng L,Kong F L,Peng Z,Liu S Y,Yu S Y,Lu G.2011.Identification,isolation and expression analysis of auxin response factor(ARF)genes in Solanum lycopersicum.Plant Cell Reports,30,2059-2073.
Xing H Y,Pudake R N,Guo G G,Xing G F,Hu Z R,Zhang YR,Sun Q X,Ni Z F.2011.Genome-wide identification and expression profiling of auxin response factor(ARF)gene family in maize.BMC Genomics,12,178.
Yang J,Tian L,Sun M X,Huang X Y,Zhu J,Guan Y F.2013.AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis.Plant Physiology,162,720-731.
Yang J H,Han S J,Yoon E K,Lee W S.2006.Evidence of an auxin signal pathway,microRNA167-ARF8-GH3,and its response to exogenous auxin in cultured rice cells.Nucleic Acids Research,34,1892-1899.
Yoon E K,Yang J H,Lim J,Kim S H,Kim S K,Lee W S.2010.Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development.Nucleic Acids Research,38,1382-1391.
Zhang X L,Yan F,Tang Y W,Yuan Y J,Deng W,Li Z G.2015.Auxin response gene SlARF3 plays multiple roles in tomato development and is involved in the formation of epidermal cells and trichomes.Plant and Cell Physiolgy,56,2110-2124.
Zhou X J,Wu X Z,Li T J,Jia M L,Liu X S,Zou Y L,Liu ZX,Wen F.2017.Identification,characterization,and expression analysis of auxin response factor(ARF)gene family in Brachypodium distachyon.Functional&Integrative Genomics,18,709-724.
Chandler J W.2016.Auxin response factors.Plant Cell and Environment,39,1014-1028.
Corso M,Vannozzi A,Ziliotto F,Zouine M,Maza E,Nicolato T,Vitulo N,Meggio F,Valle G,Bouzayen M,Müller M,Munné-Bosch S,Lucchin M,Bonghi C.2016.Grapevine rootstocks differentially affect the rate of ripening and modulate auxinrelated genes in Cabernet Sauvignon berries.Front Plant Science,7,69.
Dharmasiri N,Estelle M.2004.Auxin signaling and regulated protein degradation.Plant Science,9,1360-1385.
Die J V,Gil J,Millan T.2018.Genome-wide identification of the auxin response factor gene family in Cicer arietinum.BMC Genomics,19,301.
Du H,Wu N,Fu J,Wang S,Li X H,Xiao J H.2012.A GH3 family member,OsGH3-2,modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.Journal of Experimental Botany,63,6467-6480.
Estrada-Johnson E,Csukasi F,Pizarro C M,Vallarino J G,Kiryakova Y,Vioque A,Brumos J,Medina-Escobar N,Botella M A,Alonso J M,Fernie A R,Sánchez-Sevilla JF,Osorio S,Valpuesta V.2017.Transcriptomic analysis in strawberry fruits reveals active auxin biosynthesis and signaling in the ripe receptacle.Front Plant Science,8,889.
Fahlgren N,Montgomery T A,Howell M D,Allen E,Dvorak S K,Alexander A L,Carrington J C.2006.Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis.Current Biology,16,939-944.
Garcia D,Collier S A,Byrne M E,Martienssen R A.2006.Specification of leaf polarity in Arabidopsis via the transacting siRNA pathway.Current Biology,16,933-938.
Ghelli R,Brunetti P,Napoli N,De Paolis A,Cecchetti V,Tsuge T,Serino G,Matsui M,Mele G,Rinaldi G,Palumbo G A,Barozzi F,Costantino P,Cardarelli M.2018.Anewly identified flower-specific splice variant of AUXINRESPONSE FACTOR8 regulates stamen elongation and endothecium lignification in Arabidopsis.The Plant Cell,30,620-637.
Goetz M,Vivian-Smith A,Johnson S D,Koltunow A M.2006.AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis.The Plant Cell,18,1873-1886.
Ha C V,Le D T,Nishiyama R,Watanabe Y,Sulieman S,Tran U T,Mochida K,Dong N V,Shinozaki K Y,Shinozaki K,Tran L S P.2013.The auxin response factor transcription factor family in soybean:Genome-wide identification and expression analyses during development and water stress.DNA Research,20,511-524.
Hao Y,Hu G J,Breitel D,Liu M C,Mila I,Frasse P.2015.Auxin response factor SlARF2 is an essential component of the regulatory mechanism controlling fruit ripening in tomato.PLoS Genetics,11,e1005649.
Hardtke C S,Berleth T.1998.The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development.EMBOJournal,17,1405-1411.
Harper R M,Stowe-Evans E L,Luesse D R,Muto H,Tatematsu K,Watahiki M K,Yamamoto K,Liscum E.2000.The NPH4locus encodes the auxin response factor ARF7,a conditional regulator of differential growth in aerial Arabidopsis tissue.The Plant Cell,12,757-770.
Hu W,Zuo J,Yan Y,Wei Y X,Liu J H,Li M Y.2015.The auxin response factor gene family in banana:Genome-wide identification and expression analyses during development,ripening,and abiotic stress.Front Plant Science,6,742.
Hunter C,Willmann M R,Wu G,Yoshikawa M,Gutierrez-Nava D L L,Poethig S R.2006.Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis.Development,133,2973-2981.
Jong M D,Wolters-Arts M,Feron R,Mariani C,Vriezen W H.2009.The Solanum lycopersicum auxin response factor 7(SlARF7)regulates auxin signaling during tomato fruit set and development.The Plant Journal,57,160-170.
Kalluri U C,Difazio S P,Brunner A M,Tuskan G A.2007.Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.BMC Plant Biology,7,59.
Ljung K.2013.Auxin metabolism and homeostasis during plant development.Development,140,943-950.
Kumar R,Tyagi A K,Sharma A K.2011.Genome-wide analysis of auxin response factor(ARF)gene family from tomato and analysis of their role in flower and fruit development.Molecular Genetics and Genomics,285,245-260.
Li S B,OuYang W Z,Hou X J,Xie L L,Hu C G,Zhang J Z.2015.Genome-wide identification,isolation and expression analysis of auxin response factor(ARF)gene family in sweet orange(Citrus sinensis).Front Plant Science,6,119.
Liu K D,Yuan C C,Li H L,Lin W H,Yang Y J,Shen C J,Zheng X L.2015.Genome-wide identification and characterization of auxin response factor(ARF)family genes related to flower and fruit development in papaya(Carica papaya L).BMCGenomics,16,901.
Liu N,Wu S,Houten J V,Wang Y,Ding B,Fei Z,Clarke T H,Reed J W,Knaap E V D.2014.Down-regulation of AUXINRESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.Journal of Experimental Botany,65,2507-2520.
Luo X C,Sun M H,Xu R R,Shu H R,Wang J W,Zhang S Z.2014.Genome-wide identification and expression analysis of the ARF gene family in apple.Journal of Genetics,93,785-797.
Mallory A C,Bartel D P,Bartel B.2005.MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17is essential for proper development and modulates expression of early auxin response genes.The Plant Cell,17,1360-1375.
Nagpal P,Ellis C M,Weber H,Ploense S E,Barkawi L S,Guilfoyle T J,Hagen G,Alonso J M,Cohen J D,Farmer E E,Ecker J R,Reed J W.2005.Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation.Development,132,4107-4118.
Okushima Y,Fukaki H,Onoda M,THeologis A,Tasaka M.2007.ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis.The Plant Cell,19,118-130.
Okushima Y,Overvoorde P J,Arima K,Alonso J M,Chan A,Chang C,Ecker J R,Hughes B,Lui A,Nguyen D,Onodera C,Quach H,Smith A,Yu G X,Theologis A.2005.Functional genomic analysis of the AUXIN RESPONSE FACTORgene family members in Arabidopsis thaliana:Unique and overlapping functions of ARF7 and ARF19.The Plant Cell,17,444-463.
Paterson A H,Bowers J E,Chapman B A.2004.Ancient polyploidization predating divergence of the cereals,and its consequences for comparative genomics.Proceedings of the National Academy of Sciences of the United States of America,101,9903-9908.
Remington D L,Vision T J,Guilfoyle T J,Reed J W.2004.Contrasting modes of diversification in the Aux/IAA and ARF gene families.Plant Physiology,135,1738-1752.
Ren Z X,Liu R Y,Gu W T,Dong X C.2017.The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.Plant Science,256,103-111.
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y.2010.Functional analysis of the structural domain of ARF proteins in rice(Oryza sativa L).Journal of Experimental Botany,61,3971-3981.
Shen C J,Yue R Q,Sun T,Zhang L,Xu L,Tie S G,Wang H Z,Yang Y J.2015.Genome-wide identification and expression analysis of auxin response factor gene family in Medicago truncatula.Frontiers in Plant Science,6,75.
Shi M,Hu X,Wei Y,Hou X,Yuan X,Liu J.2017.Genome-wide profiling of small RNAs and degradome revealed conserved regulations of miRNAs on auxin-responsive genes during fruit enlargement in peaches.International Journal of Molecular Sciences,18,2599.
Shimizu-Mitao Y,Kakimoto T.2014.Auxin sensitivities of all Arabidopsis Aux/IAAs for degradation in the presence of every TIR1/AFB.Plant and Cell Physiology,55,1450-1459.
Shulaev V,Sargent D J,Crowhurst R N,Mockler T C,Folkerts O,Delcher A L.2011.The genome of woodland strawberry(Fragaria vesca).Nature Genetics,43,109-116.
Sun J H,Liu X J,Yang B T,Slovin J,Chen P.2014.Profiling polyphenols of two diploid strawberry(Fragaria vesca)inbred lines using UHPLC-HRMS.Food Chemistry,146,289-298.
Sun R R,Wang K B,Guo T L,Jones D C,Cobb J L,Zhang B H,Wang Q L.2015.Genome-wide identification of auxin response factor(ARF)genes and its tissue-specific prominent expression in Gossypium raimondii.Functional&Integrative Genomics,15,481-493.
Tamura K,Peterson D,Peterson N,Stecher G,Nei M,Kumar S.2011.MEGA5:Molecular evolutionary genetics analysis using maximum likelihood,evolutionary distance,and maximum parsimony methods.Molecular Biology Evolution,28,2731-2739.
Tiwari S B,Hagen G,Guilfoyle T.2003.The roles of auxin response factor domains in auxin-responsive transcription.The Plant Cell,15,533-543.
Uchiumi T,Okamoto T.2010.Rice fruit development is associated with an increased IAA content in pollinated ovaries.Planta,232,579-592.
Ulmasov T,Hagen G,Guilfoyle T J.1999.Activation and repression of transcription by auxin response factors.Proceedings of the National Academy of Sciences of the United States of America,96,5844-5849.
Wang D,Pei K,Fu Y,Sun Z,Li S,Liu H.2007.Genome-wide analysis of the auxin response factors(ARF)gene family in rice(Oryza sativa).Gene,394,13-24.
Wang J W,Wang L J,Mao Y B,Cai W J,Xue H W,Chen X Y.2005.Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis.The Plant Cell,17,2204-2216.
Wang S K,Zhang S N,Sun C D,Xu Y X,Chen Y,Yu C L,Qian Q,Jiang D A,Qi Y H.2014.Auxin response factor(OsARF12),a novel regulator for phosphate homeostasis in rice(Oryza sativa).New Phytologist,201,91-103.
Wang Y J,Deng D X,Shi Y T,Miao N,Bian Y L,Yin Z T.2012.Diversification,phylogeny and evolution of auxin response factor(ARF)family:Insights gained from analyzing maize ARF genes.Molecular Biology Reports,39,2401-2415.
Wang Y N,Li K X,Chen L,Zou Y M,Liu H P,Tian,Y P,Li D X,Wang R,Zhao F,Ferguson B J,Gresshoff P M,Li X.2015.MicroRNA167-directed regulation of the auxin response factors GmARF8a and GmARF8b is required for soybean nodulation and lateral root development.Plant Physiology,168,984-999.
Wei W,Hu Y,Cui M Y,Han Y T,Gao K,Feng J Y.2016.Identification and transcript analysis of the TCP transcription factors in the diploid woodland strawberry Fragaria vesca.Front Plant Science,7,1937.
Wu M F,Tian Q,Reed J W.2006.Arabidopsis microRNA167controls patterns of ARF6 and ARF8 expression,and regulates both female and male reproduction.Development,133,4211-4218.
Wu J,Wang F Y,Cheng L,Kong F L,Peng Z,Liu S Y,Yu S Y,Lu G.2011.Identification,isolation and expression analysis of auxin response factor(ARF)genes in Solanum lycopersicum.Plant Cell Reports,30,2059-2073.
Xing H Y,Pudake R N,Guo G G,Xing G F,Hu Z R,Zhang YR,Sun Q X,Ni Z F.2011.Genome-wide identification and expression profiling of auxin response factor(ARF)gene family in maize.BMC Genomics,12,178.
Yang J,Tian L,Sun M X,Huang X Y,Zhu J,Guan Y F.2013.AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis.Plant Physiology,162,720-731.
Yang J H,Han S J,Yoon E K,Lee W S.2006.Evidence of an auxin signal pathway,microRNA167-ARF8-GH3,and its response to exogenous auxin in cultured rice cells.Nucleic Acids Research,34,1892-1899.
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