The combinatorial introduction of
N,N-dimethyl-Lys groups into Lys-rich
-helical peptides and measuring affinities against RRE RNA were carried out. Peptide-
g, in which two Lys were replaced by
N,
N-dimethyl-Lys at 3 and 9 positions, showed low-nanomolar affinity, which is almost the same value as Rev peptide, the natural RRE ligand. Moreover, peptide-
g displays a compatible binding specificity as Rev peptide. The effects of the positions of Lys N,N-dimethylation on the specificity of RNA binding could serve as the basis of a new strategy for the design of novel agents against RNAs. The results support that nature may use N-methylation as a post-translational modification to enhance specific peptide-RNA interactions.