The Proteome Browser Web Portal

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• 作者：Robert J. A. Goode ; Simon Yu ; Anitha Kannan ; Jeffrey H. Christiansen ; Anthony Beitz ; William S. Hancock ; Edouard Nice ; A. Ian Smith
• 刊名：Journal of Proteome Research
• 出版年：2013
• 出版时间：January 4, 2013
• 年：2013
• 卷：12
• 期：1
• 页码：172-178
• 全文大小：430K
• 年卷期：v.12,no.1(January 4, 2013)
• ISSN：1535-3907

文摘

In 2010, the Human Proteome Organization launched the Human Proteome Project (HPP), aimed at identifying and characterizing the proteome of the human body. To support complete coverage, one arm of the project will take a gene- or chromosomal-centric strategy (C-HPP) aimed at identifying at least one protein product from each protein-coding gene. Despite multiple large international biological databases housing genomic and protein data, there is currently no single system that integrates updated pertinent information from each of these data repositories and assembles the information into a searchable format suitable for the type of global proteomics effort proposed by the C-HPP. We have undertaken the goal of producing a data integration and analysis software system and browser for the C-HPP effort and of making data collections from this resource discoverable through metadata repositories, such as Australian National Data Service鈥檚 Research Data Australia. Here we present our vision and progress toward the goal of developing a comprehensive data integration and analysis software tool that provides a snapshot of currently available proteomic related knowledge around each gene product, which will ultimately assist in analyzing biological function and the study of human physiology in health and disease.

Keywords:

Protein Browser; HUPO; C-HPP; database integration; database search engine; chromosome