Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

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• 作者：Qijian Song ; Jerry Jenkins ; Gaofeng Jia ; David L. Hyten ; Vince Pantalone…
• 关键词：Soybean ; Wm82.a2.v1 assembly ; BARCSOYSSR_1.0 database ; SoySNP50K BeadChip ; euchromatic and heterochromatic regions ; linkage map
• 刊名：BMC Genomics
• 出版年：2016
• 出版时间：December 2016
• 年：2016
• 卷：17
• 期：1
• 全文大小：421 KB
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• 作者单位：Qijian Song (1) <br> Jerry Jenkins (2) <br> Gaofeng Jia (1) <br> David L. Hyten (3) <br> Vince Pantalone (4) <br> Scott A. Jackson (5) <br> Jeremy Schmutz (2) (6) <br> Perry B. Cregan (1) <br><br>1. USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD, 20705, USA <br> 2. HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, 35806, USA <br> 3. Department of Agronomy & Horticulture, Center for Plant Science Innovation, 322 Keim Hall, University of Nebraska, Lincoln, NE, 68583, USA <br> 4. Department of Plant Sciences, 2431 Joe Johnson Dr., University of Tennessee, Knoxville, TN, 37996-4561, USA <br> 5. Center for Applied Genetic Technologies, University of Georgia, Athens, GA, 30602-6810, USA <br> 6. Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California, 94598, USA <br>
• 刊物主题：Life Sciences, general; Microarrays; Proteomics; Animal Genetics and Genomics; Microbial Genetics and Genomics; Plant Genetics & Genomics;
• 出版者：BioMed Central
• ISSN：1471-2164

文摘

Background A landmark in soybean research, Glyma1.01, the first whole genome sequence of variety Williams 82 (Glycine max L. Merr.) was completed in 2010 and is widely used. However, because the assembly was primarily built based on the linkage maps constructed with a limited number of markers and recombinant inbred lines (RILs), the assembled sequence, especially in some genomic regions with sparse numbers of anchoring markers, needs to be improved. Molecular markers are being used by researchers in the soybean community, however, with the updating of the Glyma1.01 build based on the high-resolution linkage maps resulting from this research, the genome positions of these markers need to be mapped.