Molecular phylogeography and paleodistribution modeling of the boreal tree species Ulmus lamellosa (T.Wang et S. L. Chang) (Ulmaceae) in China

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• 作者：Li Liu ; Wei Chen ; Dong-Ting Yan ; Jing Li ; Lin Liu ; Yi-Ling Wang
• 关键词：Ulmus lamellosa ; Phylogeography ; Climatic oscillation ; Paleodistribution modeling ; Chloroplast DNA
• 刊名：Tree Genetics & Genomes
• 出版年：2017
• 出版时间：February 2017
• 年：2017
• 卷：13
• 期：1
• 全文大小：
• 刊物主题：Forestry; Plant Genetics & Genomics; Plant Breeding/Biotechnology; Tree Biology; Biotechnology;
• 出版者：Springer Berlin Heidelberg
• ISSN：1614-2950
• 卷排序：13

文摘

The uplift of mountains and climatic oscillations are important for understanding of the demographic history and genetic structure of species. We investigated the biogeographic history of the boreal tree species Ulmus lamellosa (Ulmaceae) in China, by using a combined phylogeographic and paleodistribution modeling approach. In this study, 14 populations of endangered U. lamellosa were analyzed by using chloroplast DNA (cpDNA) sequences. A high level of genetic differentiation (Φ_ST = 86.22%) among populations with a significant phylogeographic pattern (N_ST > G_ST, P < 0.05) was found in U. lamellosa. Ten haplotypes were detected by combining chloroplast DNA data, and haplotype 3 (H3) was found to be common and widespread. The intraspecific divergence of all U. lamellosa cpDNA haplotypes (9.27 Ma; 95% HPD 5.17–13.33 Ma) most probably began in the late Miocene. The pairwise difference among haplotypes and neutrality tests (Tajima’s D and Fu’s Fs statistic) indicated that populations of U. lamellosa, except group I, have not experienced recent sudden expansions. Multiple refuge areas were identified across the entire distribution ranges of U. lamellosa. The low level of gene flow (Nm = 0.14) among populations may have resulted from isolation resulting from distance and complex topography during climatic oscillations; this isolation was probably the major process that shaped the present distribution of haplotypes. These results support the hypothesis that U. lamellosa persisted in situ during glaciations and occupied multiple localized glacial refugia, contrary to the hypotheses of large-scale range contraction and long-distance southward migration.