作者：Smitha Bhat^a ; Sandeep Mallya^a ; Vinay Koshy Varghese^a ; Pradyumna Jayaram^a ; Sanjiban Chakrabarty^a ; Kalpana S. Joshi^b ; Tanuja M. Nesari^c ; Kapaettu Satyamoorthy^a ; ^{ksatyamoorthy@manipal.edu" class="auth_mail" title="E-mail the corresponding author}

关键词：COBRA ; Combined Bisulfite Restriction Analysis ; DCS ; direct capillary sequencing ; ENCODE ; encyclopedia of DNA elements ; ESME ; epigenetic sequencing methylation ; IGV ; integrated genome viewer ; ISP ; Ion spear Particles ; PGM ; Personal Genome Machine ; TNBS ; targeted next generation bisulfite sequencing

刊名：Gene

出版年：2016

作者：Mengna Xia¹ ; Anjeza Erickson¹ ; Xiaohua Yi¹ ; Ré ; gis Moreau ; ^{rmoreau2@unl.edu" class="auth_mail" title="E-mail the corresponding author}

关键词：ACTB ; β-actin ; CPT1A ; carnitine palmitoyltransferase 1α ; CBP ; CREB binding factor ; CREB ; cAMP response element-binding protein ; DHLA ; DL-α-dihydrolipoic acid ; Elk-1 ; ETS domain-containing Elk-1 ; Elk-4 ; ETS domain-containing Elk-4 (aka SAP-1) ; ENCODE ; encyclopedia of DNA elements ; ERK1/2 ; extracellular signal-regulated protein kinases 1 and 2 ; ERK5 ; extracellular signal-regulated kinase 5 ; ETS ; E26 transformation specific sequence ; FAIRE ; formaldehyde-assisted isolation of regulatory elements ; FG

刊名：Biochimica et Biophysica Acta (BBA) - General Subjects

出版年：2016

作者：Jingyao Zeng^a ; ^b ; ¹ ; Shoucheng Liu^a ; ^b ; ¹ ; Yuhui Zhao^a ; ^b ; ¹ ; Xinyu Tan^a ; Hasan Awad Aljohi^c ; Wanfei Liu^a ; ^c ; ^{liuwf@big.ac.cn" class="auth_mail" title="E-mail the corresponding author} ; Songnian Hu^a ; ^{husn@big.ac.cn" class="auth_mail" title="E-mail the corresponding author}

关键词：RNA-seq ; RNA sequencing ; HK ; house-keeping ; TS ; tissue-specific ; RefSeq ; NCBI Reference Sequence Database ; DAVID ; Database for Annotation Visualization and Integrated Discovery ; IPA ; Ingenuity Pathway Analysis ; Real-time RT-PCR ; real-time quantitative reverse transcriptional-polymerase chain reaction ; SAGE ; serial analysis of gene expression ; EST ; expressed sequence tag ; ENCODE ; Encyclopedia of DNA Elements ; FPKM ; fragments per kilobase of exon per million fragments mapped ; FPR ; false positive r

刊名：Gene

出版年：2016

作者：Thomas M. Aune ; ^{tom.aune@vanderbilt.edu" class="auth_mail" title="E-mail the corresponding author} ; Charles F. Spurlock III ^{chase.spurlock@vanderbilt.edu" class="auth_mail" title="E-mail the corresponding author}

关键词：lncRNA ; long noncoding RNA ; eQTL ; expression quantitative trait loci ; ENCODE ; encyclopedia of DNA elements ; TH ; T helper cell ; RNA-seq ; whole genome RNA sequencing ; MEF ; mouse embryonic fibroblasts

刊名：Virus Research

出版年：2016

作者：Sarah L. Kerns^a ; ^b ; ¹ ; Leila Dorling^c ; ¹ ; Laura Fachal^d ; ^e ; ¹ ; Sø ; ren Bentzen^f ; ^g ; Paul D.P. Pharoah^c ; Daniel R. Barnes^c ; Antonio Gó ; mez-Caamañ ; o^h ; Ana M. Carballo^h ; David P. Dearnaleyⁱ ; Paula Peleteiro^h ; Sarah L. Gullifordⁱ ; Emma Hall^j ; Kyriaki Michailidou^c ; Á ; ngel Carracedo^e ; ^k ; Michael Sia^l ; Richard Stock^b ; Nelson N. Stone^b ; Matthew R. Sydes^m ; Jonathan P. Tyrer^c ; Shahana Ahmed^d ; Matthew Parliamentⁿ ; ² ; Harry Ostrer^o ; ^p ; ² ; Barry S. Rosenstein^b ; ^q ; ^r ; ² ; Ana Vega^e ; ^l ; ² ; Neil G. Burnet^s ; ² ; Alison M. Dunning^d ; ² ; Gillian C. Barnett^d ; ^t ; ² ; Catharine M.L. West^u ; ² ; ^{Catharine.West@manchester.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; on behalf of the Radiogenomics Consortium

关键词：SNP ; single nucleotide polymorphism ; GWAS ; genome-wide association study ; EBRT ; external bean radiotherapy ; BED ; biologic effective dose ; MAF ; minor allele frequency ; STAT ; standardized total average toxicity ; PCA ; principle components analysis ; TURP ; transurethral resection of the prostate ; LD ; linkage disequilibrium ; ENCODE ; encyclopedia of DNA elements ; eQTL ; expression quantitative trait locus ; GTEx ; Genotype-Tissue Expression project

刊名：EBioMedicine

出版年：2016

作者：Dianna E. Willis^a ; ^b ; Meng Wang^a ; Elizabeth Brown^a ; Lilah Fones^a ; John W. Cave^a ; ^b ; ^{joc2042@med.cornell.edu" class="auth_mail" title="E-mail the corresponding author}

关键词：ENCODE ; encyclopedia of DNA elements ; HDAC ; histone deacetylase ; MeCP2 ; methyl CpG binding protein 2 ; miRNA ; micro-RNA ; NRSF ; neuron-restrictive silencing factor ; REST ; repressor element-1 silencing transcription

刊名：Neuroscience Letters

出版年：2016

作者：Sibel Ozden^a ; ^{stopuz@istanbul.edu.tr" class="auth_mail" title="E-mail the corresponding author} ; Neslihan Turgut Kara^b ; Osman Ugur Sezerman^c ; İlknur Melis Durasi^d ; Tao Chen^e ; Goksun Demirel^a ; ¹ ; Buket Alpertunga^a ; J. Kevin Chipman^f ; Angela Mally^g

关键词：5-mdC ; 5-methyldeoxycytidine ; BSP ; bisulfite sequencing ; Cx32 ; connexin-32 ; DCB ; dichlorobenzene ; 2-dG ; 2-deoxyguanosine ; DNMT ; DNA methyltransferases ; Cdh1 ; e-cadherin ; cpne4 ; copine 4 ; GO ; gene ontology ; HCB ; hexachlorobenzene ; Igfbp2 ; insulin-like growth factor binding protein 2 ; KEGG ; Kyoto Encyclopedia of Genes and Genomes ; LC&ndash ; MS/MS ; liquid chromatography/tandem mass spectrometry ; LINE ; long interspersed nucleotide elements ; MeDIP ; methylated DNA immunoprecipitation ; MPY ; methapyrilen

刊名：Toxicology and Applied Pharmacology

出版年：2015

作者：Hongzhu Qu ; Xiangdong Fang

关键词：ENCODE project ; Chromatin structure ; Transcription factors ; DNA methylation

刊名：Genomics, Proteomics Bioinformatics

出版年：2013

作者：Sachin Pundhir^a ; ^b ; Tine Dahlbæ ; k Hannibal^c ; ^d ; Claus Heiner Bang-Berthelsen^a ; ^e ; Anne-Marie Karin Wegener^c ; Flemming Pociot^a ; ^e ; Dan Holmberg^c ; ^d ; Jan Gorodkin^a ; ^b ;

关键词：ANK-3 ; ankyrin-3 ; AWG ; Analysis Working Group ; BD ; bipolar disease ; C57BL/6 ; C57 black 6 ; CACNAC ; L-type voltage-gated calcium channel ; CD247 ; cluster of differentiation 247 ; CD3 ; cluster of differentiation 3 ; ChIP-seq ; chromatin immunoprecipitation sequencing ; CRS ; cis-regulatory sequences ; CSHL ; Cold Spring Harbor Laboratory ; CTCF ; CCCTC-binding factor ; EDTA ; ethylenediaminetetraacetic acid ; ENCODE ; Encyclopedia of DNA Elements ; ESR1 ; estrogen receptor 1 ; GENCODE ; Encyclopedia of Genes and Gen

刊名：Gene

出版年：15 July 2014

作者：Deng-Ke Niu ; ^{dkniu@bnu.edu.cn} ; ^{dengkeniu@hotmail.com} ; Li Jiang

关键词：ENCODE ; encyclopedia of DNA elements ; GWAS ; genome-wide association study ; SNP ; single nucleotide polymorphism

刊名：Biochemical and Biophysical Research Communications

出版年：2013