作者：Kecheng Zhu^a ; Na Wu^a ; Xiaoxiao Sun^a ; Huayang Guo^a ; Nan Zhang^a ; Shigui Jiang^a ; ^b ; Dianchang Zhang^a ; ^{zhangdch@scsfri.ac.cn}

关键词：ATP6 and ATP8 ; ATPase subunits 6 and 8 ; COXI&ndash ; COXIII ; cytochrome c oxidase subunits I&ndash ; III ; Cytb ; apocytochrome b ; ND1&ndash ; ND6 and ND4L ; NADH dehydrogenase subunits 1&ndash ; 6 and 4L ; rrnL ; lrRNA ; large (16S) rRNA subunit (gene) ; rrnS ; srRNA ; small (12S) rRNA subunit (gene) ; rRNA ; ribosomal RNA ; PCGs ; protein-coding genes ; tRNA ; transfer RNA ; D-loop region ; a major non-coding control region ; MP ; Maximum parsimony ; ML ; Maximum likelihood ; BI ; Bayesian inference

刊名：Gene

出版年：2017

作者：Xincong Kang^a ; ^b ; ^c ; Yongquan Hu^b ; ^c ; Jiang Hu^d ; Liqin Hu^b ; ^c ; Feng Wang^d ; Dongbo Liu^a ; ^b ; ^c ; ^{chinasaga@163.com}

关键词：PCGs ; protein-coding genes ; A ; adenine ; T ; thymine ; G ; guanine ; C ; cytosine ; atp6 & atp8 ; genes for the ATPase subunits 6 and 8 ; cox1-cox3 ; genes for cytochrome C oxidase subunits I&ndash ; III ; nad1&ndash ; nad6 and nad4L ; genes for NADH dehydrogenase subunits 1&ndash ; 6 and 4L ; rrnL ; large (16S) rRNA subunit ; rrnS ; small (12S) rRNA subunit ; trnX ; transfer RNA ; where X is replaced by one letter amino acid code of the corresponding amino acid ; ML ; maximum likelihood ; K2P ; Kimura's two parameter

刊名：Gene

出版年：2017

作者：Victor Corrê ; a Seixas^a ; ^{victorcseixas@gmail.com} ; Claudia Augusta de Moraes Russo^a ; Paulo Cesar Paiva^b

关键词：ATP6 and ATP8 ; ATPase subunits 6 and 8 ; bp ; base pairs ; CO1 &ndash ; CO3 ; Cytochrome c oxidase subunits I-III ; ND1 &ndash ; ND6 and ND4L ; NADH dehydrogenase subunits 1&ndash ; 6 and 4L ; rRNA ; ribosomal RNA ; TDRL ; tandem-duplication-random-loss ; tRNA ; transfer RNA

刊名：Gene

出版年：2017

作者：Genki Ozawa^a ; ^b ; ^{genki-ozawa@jamstec.go.jp} ; Shigeru Shimamura^b ; ^{shimas@jamstec.go.jp} ; Yoshihiro Takaki^b ; ^{takakiy@jamstec.go.jp} ; Shin-ichi Yokobori^c ; ^{yokobori@ls.toyaku.ac.jp} ; Yasuhiko Ohara^d ; ^{ohara@jodc.go.jp} ; Kiyotaka Takishita^b ; ^{takishitak@jamstec.go.jp} ; Tadashi Maruyama^b ; ^{tadashim@jamstec.go.jp} ; Katsunori Fujikura^b ; ^{fujikura@jamstec.go.jp} ; Takao Yoshida^a ; ^b ; ^{tyoshida@jamstec.go.jp}

关键词：A  ; + T ; adenosine and thymidine ; atp6 and 8 ; ATP synthase Fo subunit 6 and 8 ; bp ; base pairs ; BP ; bootstrap probability ; cob ; cytochrome b ; cox1&ndash3 ; cytochrome c oxidase subunits I-III ; dNTPs ; deoxynucleotides ; L1 ; tRNALeu1 (anticodon ; UAA) ; L2 ; tRNALeu2 (anticodon ; UAG) ; ML ; maximum likelihood ; nad1&ndash ; 6 and nad4L ; NADH dehydrogenase subunits 1&ndash ; 6 and 4L ; NCR ; non-coding region ; PCR ; polymerase chain reaction ; PP ; posterior probability ; rrnL and rrnS ; large and small subun

刊名：Marine Genomics

出版年：2017

作者：Huizhen Shi^a ; ¹ ; Ji Dong^a ; ¹ ; David M. Irwin^b ; Shuyi Zhang^c ; ^{syzhang@bio.ecnu.edu.cn" class="auth_mail" title="E-mail the corresponding author} ; Xiuguang Mao^a ; ^{xgmao@sklec.ecnu.edu.cn" class="auth_mail" title="E-mail the corresponding author}

关键词：mt ; mitochondria (l) ; Myr ; million years ; rRNA ; ribosomal RNA ; tRNA ; transfer RNA ; ND1 ; NADH dehydrogenase subunit 1 ; ND2 ; NADH dehydrogenase subunit 2 ; ND3 ; NADH dehydrogenase subunit 3 ; ND4L ; NADH dehydrogenase subunit ; ND4 ; NADH dehydrogenase subunit 4L ; ND5 ; NADH dehydrogenase subunit 5 ; ND6 ; NADH dehydrogenase subunit 6 ; COXI ; cytochrome c oxidase subunit I ; COXII ; cytochrome c oxidase subunit II ; COXIII ; cytochrome c oxidase subunit III ; ATP6 ; ATP synthase F0 subunit 6 ; ATP8 ; ATP synthase

刊名：Gene

出版年：2016

作者：Kai Liao ; Jing Yan ; Kangsen Mai ; Qinghui Ai ; ^{qhai@ouc.edu.cn" class="auth_mail" title="E-mail the corresponding author}

关键词：ATPase 6 ; ATP synthase 6 ; COX ; Cytochrome c oxidase ; CS ; Citrate synthase ; CYTB ; Cytochrome b ; D-loop ; Displacement loop ; HIF1α ; Hypoxia-inducible factor 1α ; mtDNA ; Mitochondrial DNA ; MDA ; Malondialdehyde ; ND6 ; NADH dehydrogenase subunit 6 ; ND2 ; NADH dehydrogenase subunit 2 ; ND4L ; NADH dehydrogenase 4 L ; NRF1 ; Nuclear respiratory factor 1 ; PGC1α ; Peroxisome proliferator-activated receptor gamma coactivator-1-α ; PPAR ; Peroxisome proliferator-activated receptor ; rRNA ; Ribosomal RNA ; SOD ; Supe

刊名：Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology

出版年：2016

作者：K.C.C. Capel^a ; A.E. Migotto^b ; C. Zilberberg^a ; M.F. Lin^c ; ^d ; ^e ; Z. Forsman^f ; D.J. Miller^c ; ^e ; M.V. Kitahara^b ; ^g ; ^{mvkitahara@unifesp.br" class="auth_mail" title="E-mail the corresponding author}

关键词：A ; adenine ; aa ; amino acid(s) ; ATP6 ; ATP synthase F0 subunit 6 ; ATP8 ; ATP synthase F0 subunit 8 ; bp ; base pair(s) ; C ; cytosine ; COB ; cytochrome b ; COX1&ndash3 ; cytochrome oxidase subunit 1&ndash3 ; G ; guanine ; IGS ; intergenic spacer ; indel ; insertion or deletion ; ITS ; internal transcribed spacer ; Kb ; kilobase ; m ; meter ; min ; minute ; mt ; mitochondrial ; ND1&ndash5 ; NADH dehydrogenase subunits 1&ndash5 ; ND4L ; NADH dehydrogenase subunit 4L ; nt ; nucleotide(s) ; rnl ; 16S ribosomal RNA ; rns ; 12S ribo

刊名：Gene

出版年：2016

作者：Qiqi Wang ; Zhengqing Zhang ; Guanghui Tang ; ^{tanggh@nwsuaf.edu.cn" class="auth_mail" title="E-mail the corresponding author}

关键词：PCGs ; protein-coding genes ; atp6 and atp8 ; genes for the ATPase subunits 6 and 8 ; cox1&ndash ; cox3 ; genes for cytochrome C oxidase subunits I&ndash ; III ; nad1&ndash ; nad6 and nad4l ; genes for NADH dehydrogenase subunits 1&ndash ; 6 and 4l ; rrnL ; large (16S) rRNA subunit (gene) ; rrnS ; small (12S) rRNA subunit (gene) ; trnX ; (where X is replaced by one letter amino acid code of the corresponding amino acid) ; transfer RNA

刊名：Gene

出版年：2016

作者：Kai Wang^a ; ¹ ; Xuankun Li^a ; ¹ ; Shuangmei Ding^a ; Ning Wang^a ; ^b ; Meng Mao^c ; Mengqing Wang^a ; ^d ; ^{mqwang@ippcaas.cn" class="auth_mail" title="E-mail the corresponding author} ; Ding Yang^a ; ^{dyangcau@126.com" class="auth_mail" title="E-mail the corresponding author} ; ^{dyangcau@aliyun.com" class="auth_mail" title="E-mail the corresponding author}

关键词：ATP6 and ATP8 ; genes for the ATPase subunits 6 and 8 ; COI&ndash ; COIII ; genes for cytochrome c oxidase subunits I-III ; CytB ; a gene for apocytochrome b ; ND1&ndash ; ND6 and ND4L ; genes for NADH dehydrogenase subunits 1&ndash ; 6 and 4L ; rrnL ; lrRNA ; large (16S) rRNA subunit (gene) ; rrnS ; srRNA ; small (12S) rRNA subunit (gene)

刊名：Gene

出版年：2016

作者：Chao Du^a ; Shilin He^a ; Xuhao Song^a ; Qi Liao^b ; Xiuyue Zhang^a ; Bisong Yue^a ; ^{bsyue@scu.edu.cn" class="auth_mail" title="E-mail the corresponding author}

关键词：PCGs ; protein-coding genes ; ATP8 and ATP6 ; ATPase subunits 8 and 6 ; COX1&ndash ; COX3 ; cytochrome C oxidase subunit I&ndash ; III ; CytB ; cytochrome b ; ND1&ndash ; ND6 and ND4L ; NADH dehydrogenase subunits 1&ndash ; 6 and 4 L ; lrRNA ; large (16S) rRNA subunit ; srRNA ; small (12S) rRNA subunit ; BI ; Bayesian inference ; ML ; maximum likelihood ; BPP ; Bayesian posterior probabilities ; BS ; bootstrap supports

刊名：Gene

出版年：2016