作者：Hiroki Okanishi^a ; ^b ; ¹ ; Kwang Kim^a ; ^{kwangkim0169@gmail.com} ; ^{kwangkim@bio.sci.osaka-u.ac.jp} ; Kenji Fukui^c ; Takato Yano^c ; Seiki Kuramitsu^a ; Ryoji Masui^a ; ^b

关键词：COGs ; Clusters of orthologous groups ; KAT ; lysine acyltransferase ; KDAC ; lysine deacylase ; LC-MS/MS ; liquid chromatography-tandem mass spectrometry ; PBS ; phosphate buffered saline ; PDB ; Protein Data Bank ; PTM ; post-translational modification ; RCSB ; Research Collaboratory for Structural Bioinformatics

刊名：Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

出版年：2017

作者：Stefans Mezulis ; ^{stefans.mezulis08@imperial.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Michael J.E. Sternberg ; Lawrence A. Kelley

关键词：PDB ; Protein Data Bank ; RCSB ; Research Collaboratory for Structural Bioinformatics

刊名：Journal of Molecular Biology

出版年：2016

作者：Paul D. Adams¹ ; Kathleen Aertgeerts² ; Cary Bauer³ ; Jeffrey A. Bell⁴ ; Helen M. Berman⁵ ; ⁶ ; Talapady N. Bhat⁷ ; Jeff M. Blaney⁸ ; Evan Bolton⁹ ; Gerard Bricogne¹⁰ ; David Brown¹¹ ; ¹² ; Stephen K. Burley⁵ ; ⁶ ; ¹³ ; ^{stephen.burley@rcsb.org" class="auth_mail" title="E-mail the corresponding author} ; David A. Case⁶ ; Kirk L. Clark¹⁴ ; Tom Darden¹⁵ ; Paul Emsley¹⁶ ; Victoria A. Feher¹⁷ ; ^{vfeher@ucsd.edu" class="auth_mail" title="E-mail the corresponding author} ; Zukang Feng⁵ ; ⁶ ; Colin R. Groom¹⁸ ; ^{groom@ccdc.cam.ac.uk" class="auth_mail" title="E-mail the corresponding author} ; Seth F. Harris⁸ ; Jorg Hendle¹⁹ ; Thomas Holder⁴ ; Andrzej Joachimiak²⁰ ; Gerard J. Kleywegt²¹ ; Tobias Krojer²² ; Joseph Marcotrigiano⁶ ; ²³ ; Alan E. Mark²⁴ ; John L. Markley²⁵ ; Matthew Miller²³ ; Wladek Minor²⁶ ; Gaetano T. Montelione²³ ; ²⁷ ; Garib Murshudov¹⁶ ; Atsushi Nakagawa²⁸ ; Haruki Nakamura²⁸ ; Anthony Nicholls¹⁵ ; Marc Nicklaus²⁹ ; Robert T. Nolte³⁰ ; Anil K. Padyana³¹ ; Catherine E. Peishoff³⁰ ; Susan Pieniazek³² ; Randy J. Read³³ ; Chenghua Shao⁵ ; Steven Sheriff³⁴ ; Oliver Smart²¹ ; Stephen Soisson³⁵ ; John Spurlino³⁶ ; Terry Stouch³⁷ ; Radka Svobodova³⁸ ; Wolfram Tempel³⁹ ; Thomas C. Terwilliger⁴⁰ ; Dale Tronrud⁴¹

刊名：Structure

出版年：2016

作者：Lee-Chuen Cheng^a ; Vikneswaran Murugaiyah^b ; Kit-Lam Chan^a ; ^{kitlamc@gmail.com" class="auth_mail" title="E-mail the corresponding author}

关键词：XOR ; xanthine oxidoreductase ; XDH ; xanthine dehydrogenase ; XOD ; xanthine oxidase ; TCM ; traditional Chinese medicine ; NAD+ ; nicotinamide adenine dinucleotide ; O2 ; molecular oxygen ; MeOH ; methanol ; ARASC ; animal research and service centre ; HCl ; hydrochloric acid ; ADT ; autodock tools ; RCSB PDB ; research collaboratory for structural bioinformatics protein data bank ; OECD ; organization for economic co-operation and development ; S.E.M. ; standard error of the mean ; ANOVA ; analysis of variance ; LD50 ; m

刊名：Journal of Ethnopharmacology

出版年：2015

作者：Shibdas Banerjee¹ ; Sandeep Goyal² ; Shyamalava Mazumdar ; ^{shyamal@tifr.res.in" class="auth_mail" title="E-mail the corresponding author} ;

关键词：Heme ; iron protoporphyrin IX regardless of oxidation and ligation state of the central metal ion (Fe) ; WT ; wild type CYP175A1 ; L80F ; Leucine 80 to phenylalanine mutant of CYP175A1 ; SDS-PAGE ; sodium dodecyl sulfate polyacrylamide gel electrophoresis ; Tm ; melting temperature ; PDB ; research collaboratory for structural bioinformatics (RCSB) protein data bank ; http ; //www.rcsb.org/pdb/ ; PMSF ; phenylmethylsulfonyl fluoride ; IPTG ; isopropyl-尾-d-1-thiogalactopyranoside ; EDTA ; ethylenediaminetetraacetic

刊名：Bioorganic Chemistry

出版年：2015

作者：Elena Diez-Cecilia^a ; Robert Carson^b ; Brendan Kelly^a ; Sandra van Schaeybroeck^b ; James T. Murray^c ; Isabel Rozas^a ; ^{rozasi@tcd.ie" class="auth_mail" title="E-mail the corresponding author}

关键词：CRC ; colorectal cancer ; PK ; protein kinase ; PKI ; protein kinase inhibitor ; FDA ; Federal Drug Agency ; HL-60 ; acute myeloid leukaemia cell line ; MTT ; 3-(4 ; 5-dimethylthiazol-2-yl)-2 ; 5-diphenyltetrazolium bromide ; IC50 ; half maximal inhibitory concentration ; RCSB Protein Data Bank ; Research Collaboratory for Structural Bioinformatics protein data bank ; MD ; molecular dynamics ; 4-Cl-3-CF3-Ph ; 4-chloro-3-trifluoromethylphenyl ; DFG-motif ; aspartic acid ; phenylalanine ; glycine motif ; FRET ; fluorescence r

刊名：Bioorganic & Medicinal Chemistry Letters

出版年：2015

作者：Douglas Myers-Turnbull¹ ; Spencer E. Bliven² ; Peter W. Rose³ ; Zaid K. Aziz⁴ ; Philippe Youkharibache⁵ ; Philip E. Bourne⁶ ; ^{pbourne@ucsd.edu" class="auth_mail} ; Andreas Prli膰³ ; ^{andreas.prlic@gmail.com" class="auth_mail}

关键词：PDB ; Protein Data Bank ; CE ; Combinatorial Extension ; RCSB ; Research Collaboratory for Structural Bioinformatics ; ROC ; receiver operating characteristic ; EC ; Enzyme Commission ; %id ; percent sequence identity

刊名：Journal of Molecular Biology

出版年：29 May 2014

作者：Summer B. Thyme¹ ; ² ; ^{sthyme@u.washington.edu} ; David Baker¹ ; ³ ; ^{pbradley@fhcrc.org} ; Philip Bradley⁴ ;

关键词：RCSB ; Research Collaboratory for Structural Bioinformatics ; PDB ; Protein Data Bank ; REU ; ROSETTA energy unit

刊名：Journal of Molecular Biology

出版年：2012

作者：Kunqian Yu ; Wei Fu ; Hong Liu ; Xiaomin Luo ; Kai Xian Chen ; Jianping Ding ; Jianhua Shen ; Hualiang Jiang

刊名：Biophysical Journal

出版年：2004