作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Kim M Pepin (1) (2) (3)
Clint B Leach (3)
Cecilia Marques-Toledo (4)
Karla H Laass (5)
Kelly S Paixao (5)
Angela D Luis (1) (3) (8)
David TS Hayman (10) (3) (6)
Nels G Johnson (3)
Michael G Buhnerkempe (3) (9)
Scott Carver (3) (7)
Daniel A Grear (3)
Kimberly Tsao (3)
Alvaro E Eiras (5)
Colleen T Webb (1) (3)

1. Fogarty International Center ; National Institute of Health ; Bethesda ; Maryland ; 20892 ; USA
2. United States Department of Agriculture ; National Wildlife Research Center ; Wildlife Services ; Animal and Plant Health Inspection Service ; 4101 Laporte Ave ; Fort Collins ; CO ; 80521 ; USA
3. Department of Biology ; Colorado State University ; Fort Collins ; Colorado ; 80523 ; USA
4. Ecovec S.A ; Belo Horizonte ; Minas Gerais ; Brazil
5. Departamento de Parasitologia ; Universidade Federal de Minas Gerais ; Av. Pres. Antonio Carlos ; 6627 ; Pampulha ; Belo Horizonte ; MG ; Brazil
8. Current address ; Department of Wildlife Biology ; College of Forestry and Conservation ; University of Montana ; Missoula ; Montana ; 59812 ; USA
10. Current address ; EpiLab ; Infectious Disease research Centre (IDReC) ; Hopkirk Research Institute ; Institute of Veterinary ; Animal and Biomedical Sciences ; Massey University ; Palmerston North ; Manawatu ; New Zealand
6. Department of Biology ; University of Florida ; Gainesville ; Florida ; 32611 ; USA
9. Current address ; Department of Ecology and Evolutionary Biology ; University of California 鈥?Los Angeles ; Los Angeles ; California ; 90095 ; USA
7. School of Biological Sciences ; University of Tasmania ; Hobart ; 7000 ; Australia

关键词：Vector control ; Dengue ; Surveillance ; Vector density ; Mosquito ; human interactions ; Gravity model ; INLA

刊名：Parasites & Vectors

出版年：2015

作者：Paul B Frandsen (1) (2)
Brett Calcott (3)
Christoph Mayer (4)
Robert Lanfear (5) (6) (7)

1. Office of Research Information Services ; Office of the CIO ; Smithsonian Institution ; Washington ; D.C. ; USA
2. Department of Entomology ; Rutgers University ; New Brunswick ; New Jersey ; USA
3. School of Life Sciences ; Arizona State University ; Tempe ; AZ ; USA
4. Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)/Zentrum f眉r Molekulare Biodiversit盲tsforschung (ZMB) ; Bonn ; Germany
5. Ecology Evolution and Genetics ; Research School of Biology ; Australian National University ; Canberra ; ACT ; Australia
6. National Evolutionary Synthesis Center ; Durham ; NC ; USA
7. Department of Biological Sciences ; Macquarie University ; Sydney ; Australia

关键词：Model selection ; Partitioning ; Partitionfinder ; Phylogenetics ; Phylogenomics ; K ; means ; Clustering ; Ultra ; conserved elements ; UCE鈥檚

刊名：BMC Evolutionary Biology

出版年：2015

作者：Doori Park (1)
Je Won Jung (1)
Beom-Soon Choi (2)
Murukarthick Jayakodi (3)
Jeongsoo Lee (2)
Jongsung Lim (2)
Yeisoo Yu (4)
Yong-Soo Choi (5)
Myeong-Lyeol Lee (5)
Yoonseong Park (6)
Ik-Young Choi (2)
Tae-Jin Yang (3)
Owain R Edwards (7)
Gyoungju Nah (3)
Hyung Wook Kwon (1)

1. Biomodulation Major ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
2. National Instrumentation Center for Environmental Management ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-742 ; Republic of Korea
3. Department of Plant Science ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
4. Arizona Genomics Institute ; University of Arizona ; Tucson ; Arizona ; 85721 ; USA
5. National Institute of Agricultural Biotechnology ; Rural development Administration ; Suwon ; 441-707 ; Republic of Korea
6. Department of Entomology ; Kansas State University ; Manhattan ; Kansas ; USA
7. CSIRO Ecosystem Sciences ; Centre for Environment and Life Sciences ; Underwood Avenue ; Floreat ; WA ; 6014 ; Australia

关键词：Apis cerana ; Asian honey bee ; Genome ; Social insect ; Chemosensory receptors ; Honey bee immunity

刊名：BMC Genomics

出版年：2015

作者：Yan-Jun Kang (1) (2)
Xiu-Nian Diao (3)
Gao-Yu Zhao (1)
Ming-Hui Chen (4)
Yanwen Xiong (1) (2)
Mang Shi (1) (5)
Wei-Ming Fu (4)
Yu-Jiang Guo (3)
Bao Pan (3)
Xiao-Ping Chen (1) (2)
Edward C Holmes (1) (5)
Joseph J Gillespie (6)
Stephen J Dumler (6)
Yong-Zhen Zhang (1) (2)

1. Department of Zoonoses ; State Key Laboratory for Infectious Disease Prevention and Control ; National Institute for Communicable Disease Control and Prevention ; Chinese Center for Disease Control and Prevention ; Changping Liuzi 5 ; Beijing ; 102206 ; China
2. Center for Diagnosis and Treatment of Infectious Diseases ; Hangzhou ; China
3. Veterinary Station ; Jiulingtuan of Nongwushi ; Bole ; Xinjiang Uygur Autonomous Region ; China
4. Veterinary Station ; Emin ; Nongjiushi ; Xinjiang Uygur Autonomous Region ; China
5. Marie Bashir Institute for Infectious Diseases and Biosecurity ; Charles Perkins Centre ; School of Biological Sciences and Sydney Medical School ; The University of Sydney ; Sydney ; Australia
6. Departments of Pathology and Microbiology & Immunology ; University of Maryland School of Medicine ; Baltimore ; MD ; USA

关键词：Co ; divergence ; Evolution ; Phylogeny ; Rickettsiales bacteria ; Ticks ; Vectors

刊名：BMC Evolutionary Biology

出版年：2014