作者：Daniel I Speiser (1) (2)
M Sabrina Pankey (1)
Alexander K Zaharoff (1)
Barbara A Battelle (3)
Heather D Bracken-Grissom (4)
Jesse W Breinholt (5)
Seth M Bybee (6)
Thomas W Cronin (7)
Anders Garm (8)
Annie R Lindgren (9)
Nipam H Patel (10)
Megan L Porter (11)
Meredith E Protas (12)
Ajna S Rivera (13)
Jeanne M Serb (14)
Kirk S Zigler (15)
Keith A Crandall (16) (17)
Todd H Oakley (1)

1. Department of Ecology ; Evolution ; and Marine Biology ; University of California Santa Barbara ; Santa Barbara ; CA ; USA
2. Department of Biological Sciences ; University of South Carolina ; Columbia ; SC ; USA
3. The Whitney Laboratory for Marine Bioscience ; University of Florida ; St. Augustine ; FL ; USA
4. Department of Biological Sciences ; Florida International University-Biscayne Bay Campus ; North Miami ; FL ; USA
5. Florida Museum of Natural History ; University of Florida ; Gainesville ; FL ; USA
6. Department of Biology ; Brigham Young University ; Provo ; UT ; USA
7. Department of Biological Sciences ; University of Maryland Baltimore County ; Baltimore ; MD ; USA
8. Department of Biology ; Marine Biological Section ; University of Copenhagen ; Copenhagen ; Denmark
9. Department of Biology ; Portland State University ; Portland ; OR ; USA
10. Department of Molecular and Cell Biology & Department of Integrative Biology ; University of California ; Berkeley ; CA ; USA
11. Department of Biology ; University of South Dakota ; Vermillion ; SD ; USA
12. Department of Natural Sciences and Mathematics ; Dominican University of California ; San Rafael ; CA ; USA
13. Department of Biology ; University of the Pacific ; Stockton ; CA ; USA
14. Department of Ecology ; Evolution ; and Organismal Biology ; Iowa State University ; Ames ; IA ; USA
15. Department of Biology ; Sewanee ; The University of the South ; Sewanee ; TN ; USA
16. Computational Biology Institute ; George Washington University ; Ashburn ; VA ; USA
17. Department of Invertebrate Zoology ; National Museum of Natural History ; Smithsonian Institution ; Washington ; DC ; USA

关键词：Bioinformatics ; Eyes ; Evolution ; Galaxy ; Next ; generation sequence analysis ; Orthology ; Phototransduction ; Transcriptomes ; Vision

刊名：BMC Bioinformatics

出版年：2014

作者：Fabian Amman (30) (31)
Michael T Wolfinger (31) (32) (33)
Ronny Lorenz (31)
Ivo L Hofacker (31) (34) (38)
Peter F Stadler (30) (31) (34) (35) (36) (37)
Sven Findei脽 (31) (38)

30. Bioinformatics Group ; Department of Computer Science and the Interdisciplinary Center for Bioinformatic ; University of Leipzig ; H盲rtelstra脽e 16鈥?8 ; 04107 ; Leipzig ; Germany
31. Institute for Theoretical Chemistry ; University of Vienna ; W盲hringerstra脽e 17 ; 1090 ; Vienna ; Austria
32. Center for Integrative Bioinformatics Vienna (CIBIV) ; Max F. Perutz Laboratories ; University of Vienna ; Medical University of Vienna ; Dr. Bohr-Gasse 9 ; 1030 ; Vienna ; Austria
33. Department of Biochemistry and Molecular Cell Biology ; Max F. Perutz Laboratories ; University of Vienna ; Dr. Bohr-Gasse 9 ; 1030 ; Vienna ; Austria
34. Center for RNA in Technology and Health ; University of Copenhagen ; Gr酶nneg氓rdsvej 3 ; Frederiksberg C ; Denmark
38. Research group Bioinformatics and Computational Biology ; Faculty of Computer Science ; University of Vienna ; W盲hringerstra脽e 29 ; 1090 ; Vienna ; Austria
35. Max Planck Institute for Mathematics in the Sciences ; Inselstra脽e 22 ; D-04103 ; Leipzig ; Germany
36. Fraunhofer Institute for Cell Therapy and Immunology ; Perlickstra脽e 1 ; D-04103 ; Leipzig ; Germany
37. Santa Fe Institute ; 1399 Hyde Park Road ; Santa Fe NM ; 87501 ; USA

关键词：Differential RNA sequencing ; dRNA ; seq ; TSS ; Transcription start site annotation ; Transcriptome ; RESTful Web service ; Next generation sequencing

刊名：BMC Bioinformatics

出版年：2014

作者：Christian Anthon (1) (2)
Hakim Tafer (3) (4)
Jakob H Havgaard (1) (2)
Bo Thomsen (5)
Jakob Hedegaard (5) (6)
Stefan E Seemann (1) (2)
Sachin Pundhir (1) (2)
Stephanie Kehr (3) (4)
Sebastian Bartschat (3) (4)
Mathilde Nielsen (5)
Rasmus O Nielsen (5) (7)
Merete Fredholm (1) (2)
Peter F Stadler (1) (3) (4)
Jan Gorodkin (1) (2)

1. Center for non-coding RNA in Technology and Health ; University of Copenhagen ; DK-1870 ; Frederiksberg ; Denmark
2. Department of Clinical and Animal Sciences ; University of Copenhagen ; DK-1870 ; Frederiksberg ; Denmark
3. Bioinformatics Group ; Department of Computer Science ; Interdisciplinary Center for Bioinformatics ; Universit盲t Leipzig ; H盲rtelstr. 16 - 18 ; D-04107 ; Leipzig ; Germany
4. Transcriptome Bioinformatics group ; LIFE ; Leipzig Research Center for Civilization Diseases ; Universit盲t Leipzig ; Philipp-Rosenthal-Strasse 27 ; D-04107 ; Leipzig ; Germany
5. Department of Molecular Biology and Genetics ; Aarhus University ; Blichers All茅 20 ; DK-8830 ; Tjele ; Denmark
6. Department of Molecular Medicine (MOMA) ; Molecular Diagnostic Laboratory ; Aarhus University Hospital ; Skejby ; Brendstrupgaardsvej 100 ; DK-8200 ; Aarhus N ; Denmark
7. GenoSkan A/S ; Niels Pedersens All茅 2 ; DK-8830 ; Tjele ; Denmark

刊名：BMC Genomics

出版年：2014