作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Andreas Altenburger (1)
Hyun Soo Rho (2)
Cheon Young Chang (3)
Martin Vinther S酶rensen (1)

1. Natural History Museum of Denmark ; University of Copenhagen ; Universitetsparken 15 ; 2100 ; Copenhagen ; Denmark
2. Dokdo Research Center ; Korean Institute of Ocean Science and Technology ; 767-813 ; Uljin ; South Korea
3. Department of Biological Science ; College of Natural Sciences ; Daegu University ; 712-714 ; Gyeongsan ; South Korea

关键词：Biodiversity ; Meiofauna ; Morphology ; Taxonomy ; Zelinkaderidae

刊名：Zoological Studies

出版年：2015

作者：Ross Barnett (59) (67)
Nobuyuki Yamaguchi (60)
Beth Shapiro (61)
Simon YW Ho (62)
Ian Barnes (63)
Richard Sabin (64)
Lars Werdelin (65)
Jacques Cuisin (66)
Greger Larson (59)

59. Durham Evolution and Ancient DNA ; Department of Archaeology ; Durham University ; Durham ; DH1 3LE ; UK
67. Centre for GeoGenetics ; K酶benhavn Universitet ; The Natural History Museum 脴ster Voldgade ; Copenhagen ; 5-7 DK-1350 ; Denmark
60. Department of Biological and Environmental Sciences ; Qatar University ; Doha ; Qatar
61. Department of Ecology and Evolutionary Biology ; University of California Santa Cruz ; Santa Cruz ; CA ; 95064 ; USA
62. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
63. School of Biological Sciences ; Royal Holloway University of London ; Egham ; Surrey ; TW20 0EX ; UK
64. Department of Life Science ; Natural History Museum ; Cromwell Road ; London ; SW7 5BD ; UK
65. Department of Palaeobiology ; Swedish Museum of Natural History ; Box 50007 ; Stockholm ; SE-10405 ; Sweden
66. Mus茅um National d鈥橦istoire Naturelle ; 54 Rue Cuvier ; Paris ; 75005 ; France

关键词：Barbary lion ; Panthera leo ; Extinction ; Mitochondrial DNA ; Ancient DNA ; Phylogeography

刊名：BMC Evolutionary Biology

出版年：2014

作者：Chuan-Chao Wang (1)
M Thomas P Gilbert (2)
Li Jin (1) (3)
Hui Li (1)

1. State Key Laboratory of Genetic Engineering and MOE Key Laboratory of Contemporary Anthropology ; School of Life Sciences ; Fudan University ; Shanghai ; 200438 ; China
2. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; Copenhagen ; 1350 ; Denmark
3. Department of Computational Genetics ; CAS-MPG Partner Institute for Computational Biology ; Shanghai ; 200031 ; China

关键词：Y chromosome ; Substitution rate ; Demographic history ; Lineage dating

刊名：Investigative Genetics

出版年：2014

作者：Nicolas Bekkouche (1)
Reinhardt M Kristensen (2)
Andreas Hejnol (3)
Martin V S酶rensen (4)
Katrine Worsaae (1)

1. Marine Biological Section ; Department of Biology ; University of Copenhagen ; Universitetsparken 4 ; 2100 ; Copenhagen 脴 ; Denmark
2. Natural History Museum of Denmark ; Universitetsparken 15 ; 2100 ; Copenhagen 脴 ; Denmark
3. Sars International Centre for Marine Molecular Biology ; University of Bergen ; Thorm酶hlensgate 55 ; Bergen ; N-5008 ; Norway
4. Natural History Museum of Denmark ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen K ; Denmark

关键词：CLSM ; 3D reconstructions ; Jaw apparatus ; F ; actin ; Trophi ; Mastax

刊名：Frontiers in Zoology

出版年：2014

作者：Daniel I Speiser (1) (2)
M Sabrina Pankey (1)
Alexander K Zaharoff (1)
Barbara A Battelle (3)
Heather D Bracken-Grissom (4)
Jesse W Breinholt (5)
Seth M Bybee (6)
Thomas W Cronin (7)
Anders Garm (8)
Annie R Lindgren (9)
Nipam H Patel (10)
Megan L Porter (11)
Meredith E Protas (12)
Ajna S Rivera (13)
Jeanne M Serb (14)
Kirk S Zigler (15)
Keith A Crandall (16) (17)
Todd H Oakley (1)

1. Department of Ecology ; Evolution ; and Marine Biology ; University of California Santa Barbara ; Santa Barbara ; CA ; USA
2. Department of Biological Sciences ; University of South Carolina ; Columbia ; SC ; USA
3. The Whitney Laboratory for Marine Bioscience ; University of Florida ; St. Augustine ; FL ; USA
4. Department of Biological Sciences ; Florida International University-Biscayne Bay Campus ; North Miami ; FL ; USA
5. Florida Museum of Natural History ; University of Florida ; Gainesville ; FL ; USA
6. Department of Biology ; Brigham Young University ; Provo ; UT ; USA
7. Department of Biological Sciences ; University of Maryland Baltimore County ; Baltimore ; MD ; USA
8. Department of Biology ; Marine Biological Section ; University of Copenhagen ; Copenhagen ; Denmark
9. Department of Biology ; Portland State University ; Portland ; OR ; USA
10. Department of Molecular and Cell Biology & Department of Integrative Biology ; University of California ; Berkeley ; CA ; USA
11. Department of Biology ; University of South Dakota ; Vermillion ; SD ; USA
12. Department of Natural Sciences and Mathematics ; Dominican University of California ; San Rafael ; CA ; USA
13. Department of Biology ; University of the Pacific ; Stockton ; CA ; USA
14. Department of Ecology ; Evolution ; and Organismal Biology ; Iowa State University ; Ames ; IA ; USA
15. Department of Biology ; Sewanee ; The University of the South ; Sewanee ; TN ; USA
16. Computational Biology Institute ; George Washington University ; Ashburn ; VA ; USA
17. Department of Invertebrate Zoology ; National Museum of Natural History ; Smithsonian Institution ; Washington ; DC ; USA

关键词：Bioinformatics ; Eyes ; Evolution ; Galaxy ; Next ; generation sequence analysis ; Orthology ; Phototransduction ; Transcriptomes ; Vision

刊名：BMC Bioinformatics

出版年：2014

作者：Peter Kerpedjiev (7) (8)
Jes Frellsen (6) (7)
Stinus Lindgreen (7) (7)
Anders Krogh (7) (8)

7. Biomolecular Interaction Centre ; School of Biological Sciences ; University of Canterbury ; Private Bag 4800 ; Christchurch ; 8020 ; New Zealand
8. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen K ; Denmark
6. Department of Engineering ; University of Cambridge ; Trumpington Street ; Cambridge ; CB2 1PZ ; UK

关键词：Short ; read mapping ; Sequence alignment ; Next ; generation sequencing ; Ancient DNA ; PAR ; CLIP ; Xeno mapping

刊名：BMC Bioinformatics

出版年：2014

作者：Stinus Lindgreen (11) (12) (13)
Anders Krogh (11) (12)
Jakob Skou Pedersen (11) (14)

11. Section for Computational and RNA Biology ; Department of Biology ; University of Copenhagen ; Ole Maaloes Vej ; 2200 ; Copenhagen ; Denmark
12. Center of Excellence for GeoGenetics ; Natural History Museum of Denmark and Department of Biology ; University of Copenhagen ; Oester Voldgade 5-7 ; 1350 ; Copenhagen K ; Denmark
13. Biomolecular Interaction Centre ; School of Biological Sciences ; University of Canterbury ; Private Bag 4800 ; 8041 ; Christchurch ; New Zealand
14. Department of Molecular Medicine ; Aarhus University Hospital ; Skejby ; Brendstrupgaardsvej 100 ; DK-8200 ; Aarhus N ; Denmark

关键词：Next ; generation sequencing ; SNP ; Genotyping ; Illumina ; Ancient DNA

刊名：BMC Research Notes

出版年：2014

作者：Ulrik B Pedersen (1)
Martin Stendel (2)
Nicholas Midzi (3) (4)
Takafira Mduluza (5) (6)
White Soko (4) (6)
Anna-Sofie Stensgaard (1) (7)
Birgitte J Vennervald (1)
Samson Mukaratirwa (8)
Thomas K Kristensen (1) (7)

1. Department of Veterinary Disease Biology ; Faculty of Health and Medical Sciences ; University of Copenhagen ; Dyrl忙gevej 100 ; 1870 ; Frederiksberg C ; Denmark
2. Danish Meteorological Institute ; Copenhagen ; Denmark
3. Department of Medical Microbiology ; University of Zimbabwe ; College of Health Sciences ; Harare ; Zimbabwe
4. National Institute of Health Research ; Ministry of Health and Child Care ; Causeway ; Harare ; Zimbabwe
5. Department of Biochemistry ; University of Zimbabwe ; Harare ; Zimbabwe
6. School of Laboratory Medicine and Medical Sciences ; University of KwaZulu-Natal ; KwaZulu-Natal ; South Africa
7. Center for Macroecology ; Evolution and Climate ; Natural History Museum of Denmark ; University of Copenhagen ; Copenhagen ; Denmark
8. School of Life Sciences ; University of KwaZulu-Natal ; KwaZulu-Natal ; South Africa

关键词：Snail ; Species distribution modelling ; Climate change ; Regional climate models ; Schistosomiasis ; Fascioliasis

刊名：Parasites & Vectors

出版年：2014

作者：Thorfinn Sand Korneliussen (1)
Anders Albrechtsen (2)
Rasmus Nielsen (1) (3)

1. Centre for GeoGenetics ; Natural History Museum of Denmark ; Copenhagen ; Denmark
2. Bioinformatics Centre ; Department of Biology ; University of Copenhagen ; Ole Maaloes Vej 5 ; Copenhagen ; DK-2200 ; Denmark
3. Department of Integrative Biology and Statistics ; UC-Berkeley ; 4098 VLSB ; Berkeley ; California ; 94720 ; USA

关键词：Next ; generation sequencing ; Bioinformatics ; Population genetics ; Association studies

刊名：BMC Bioinformatics

出版年：2014