作者：Chen Jiao (1) (2) (3)
Min Gao (1) (2)
Xiping Wang (1) (2)
Zhangjun Fei (3) (4)

1. State Key Laboratory of Crop Stress Biology in Arid Areas ; College of Horticulture ; Northwest A&F University ; Yangling ; Shaanxi ; 712100 ; China
2. Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China ; Ministry of Agriculture ; Northwest A&F University ; Yangling ; Shaanxi ; 712100 ; China
3. Boyce Thompson Institute for Plant Research ; Cornell University ; Ithaca ; NY ; 14853 ; USA
4. USDA Robert W. Holley Center for Agriculture and Health ; Tower Road ; Ithaca ; NY ; 14853 ; USA

关键词：Grape ; Chinese wild Vitis ; De novo transcriptome ; Disease related genes ; Cis ; NATs

刊名：BMC Genomics

出版年：2015

作者：Carmen Leida (1)
Claudio Moser (1)
Cristina Esteras (2)
Ronan Sulpice (3) (4)
John E Lunn (3)
Frank de Langen (5)
Antonio J Monforte (6)
Belen Pic贸 (2)

1. Research and Innovation Center ; Department Genomics and Biology of Fruit Crops ; Fondazione Edmund Mach (FEM) ; Via E. Mach 1 ; 38010 ; San Michele ; Italy
2. Institute for the Conservation and Breeding of Agricultural Biodiversity (COMAV-UPV) ; Universitat Polit猫cnica de Valencia ; Camino de Vera s/n ; 46022 ; Valencia ; Spain
3. Max-Planck-Institute of Molecular Plant Physiology ; Wissenschaftspark Golm ; Am M眉hlenberg 1 ; 14476 ; Potsdam ; Germany
4. Plant Systems Biology Research Laboratory ; Department of Botany and Plant Science ; Plant and AgriBiosciences Research Centre ; National University of Galway ; University Road ; Galway ; Ireland
5. HMCLAUSE (Business Unit of Limagrain) ; Station de Mas Saint Pierre ; La Galine ; 13210 ; Saint-R茅my-de-Provence ; France
6. Instituto de Biolog铆a Molecular y Celular de Plantas (IBMCP) ; Universitat Polit猫cnica de Val猫ncia (UPV)-Consejo Superior de Investigaciones Cient铆ficas (CSIC) ; Ciudad Polit茅cnica de la Innovaci贸n (CPI) ; Ed. 8E ; C/Ingeniero Fausto Elio s/n ; 46022 ; Valencia ; Spain

关键词：Melon ; Climacteric ripening ; Sugar ; Germplasm collection

刊名：BMC Genetics

出版年：2015

作者：Sang He (1)
Yusheng Zhao (1)
M Florian Mette (1)
Reiner Bothe (2)
Erhard Ebmeyer (2)
Timothy F Sharbel (1)
Jochen C Reif (1)
Yong Jiang (1)

1. Department of Breeding Research ; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben ; D-06466 Stadt ; Seeland ; Germany
2. KWS LOCHOW GMBH ; D-29296 ; Bergen ; Germany

关键词：Elite wheat ; Map ; dependent imputation ; Map ; independent imputation ; Intensive simulation ; genomic selection ; Association mapping

刊名：BMC Genomics

出版年：2015

作者：Katherine W Jordan (1)
Shichen Wang (1)
Yanni Lun (1) (2)
Laura-Jayne Gardiner (3)
Ron MacLachlan (4)
Pierre Hucl (4)
Krysta Wiebe (4)
Debbie Wong (5)
Kerrie L Forrest (5)
Andrew G Sharpe (6)
Christine HD Sidebottom (6)
Neil Hall (3)
Christopher Toomajian (1)
Timothy Close (7)
Jorge Dubcovsky (8) (9)
Alina Akhunova (1) (2)
Luther Talbert (10)
Urmil K Bansal (11)
Harbans S Bariana (11)
Matthew J Hayden (5)
Curtis Pozniak (4)
Jeffrey A Jeddeloh (12)
Anthony Hall (3)
Eduard Akhunov (1)
IWGS Consortium

1. Department Plant Pathology ; Kansas State University ; Manhattan ; KS ; 66506 ; USA
2. Integrated Genomics Facility ; Kansas State University ; Manhattan ; KS ; 66506 ; USA
3. Institute of Integrative Biology ; University of Liverpool ; Liverpool ; L69 7ZB ; UK
4. Department Plant Sciences ; University of Saskatchewan ; Saskatoon ; SK ; S7N 5A8 ; Canada
5. Department Environment and Primary Industries ; Bundoora ; VIC ; 3083 ; Australia
6. National Research Council Canada ; 110 Gymnasium Place ; Saskatoon ; SK ; S7N 0聽W9 ; Canada
7. Department Botany & Plant Sciences ; University of California ; Riverside ; CA ; 92521 ; USA
8. Department Plant Sciences ; University of California ; Davis ; CA ; 95616 ; USA
9. Howard Hughes Medical Institute ; Chevy Chase ; MD ; 20815 ; USA
10. Department Plant Sciences & Plant Pathology ; Montana State University ; Bozeman ; MT ; 59717 ; USA
11. Plant Breeding Institute-Cobbitty ; The University of Sydney ; PMB4011 ; Narellan ; NSW ; 2567 ; Australia
12. Roche NimbleGen ; Inc ; Madison ; WI ; 53719 ; USA

刊名：Genome Biology

出版年：2015

作者：Jayakodi Murukarthick (27)
Perumal Sampath (27)
Sang Choon Lee (27)
Beom-Soon Choi (28)
Natesan Senthil (29)
Shengyi Liu (30)
Tae-Jin Yang (27)

27. Department of Plant Science ; Plant Genomics and Breeding Institute ; and Research Institute for Agriculture and Life Sciences ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
28. PHYZEN Genome Institute ; 501-1 ; Gwanak Century Tower ; 1808 Nambusunhwan-ro ; Gwanak-gu ; Seoul ; 151-836 ; Korea
29. Genomics and Proteomics Laboratory ; Centre for Plant Molecular Biology & Biotechnology ; Tamil Nadu Agricultural University ; Coimbatore ; Tamilnadu ; India
30. The Key Laboratory of Oil Crops Biology and Genetic Breeding ; The Ministry of Agriculture ; Oil Crops Research Institute ; the Chinese Academy of Agricultural Sciences ; Wuhan ; 430062 ; China

关键词：Brassica ; Miniature inverted ; repeat transposable element (MITE) ; Terminal ; repeat retrotransposon in miniature (TRIM) ; Miniature form transposable elements (mTEs) ; Short interspersed elements (SINEs) ; TE Database

刊名：BMC Research Notes

出版年：2014

作者：Benildo G de los Reyes (1)
Bijayalaxmi Mohanty (2)
Song Joong Yun (3)
Myoung-Ryoul Park (1)
Dong-Yup Lee (2)

1. School of Biology and Ecology ; University of Maine ; Orono ; ME ; 04469 ; USA
2. Department of Chemical and Biomolecular Engineering ; National University of Singapore ; Singapore ; 117576 ; Singapore
3. Department of Crop Science and Institute of Agricultural Science and Technology ; Chonbuk National University ; Chonju ; 561-756 ; Korea

关键词：Cis ; elements ; Trans ; acting factors ; Spatio ; temporal regulation ; Regulatory network ; Comparative genomics

刊名：Rice

出版年：2015

作者：Yu Wang (22) (23)
Michael Florian Mette (22)
Thomas Miedaner (23)
Marlen Gottwald (24)
Peer Wilde (25)
Jochen C Reif (22)
Yusheng Zhao (22)

22. Leibniz Institute of Plant Breeding and Crop Plant Research (IPK) ; Gatersleben ; 06466 ; Germany
23. State Plant Breeding Institute ; University of Hohenheim ; Stuttgart ; 70599 ; Germany
24. Syngenta Agro GmbH ; Am Technologiepark 1-5 ; Maintal ; 63477 ; Germany
25. KWS LOCHOW GMBH ; Ferdinand-von-Lochow-Str. 5 ; 29303 ; Bergen ; Germany

关键词：Marker ; assisted selection ; Genomic selection ; Cross ; validation ; Hybrid rye ; Relatedness ; Evaluation locations ; Testing years

刊名：BMC Genomics

出版年：2014

作者：Changsoo Kim (1)
Tae-Ho Lee (1) (4)
Hui Guo (1)
Sung Jin Chung (2)
Andrew H Paterson (1)
Do-Soon Kim (3)
Geung-Joo Lee (2)

1. Plant Genome Mapping Lab ; University of Georgia ; 111 Riverbend RD ; Athens ; GA ; 30602 ; USA
4. Genomics Division ; National Academy of Agricultural Science ; Rural Development Administration ; Suwon ; 441-707 ; South Korea
2. Department of Horticulture ; Chungnam National University ; Daejeon ; 305-764 ; South Korea
3. Department of Plant Science ; Research Institute of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; South Korea

关键词：Miscanthus sinensis ; Miscanthus sacchariflorus ; Expressed sequence tags ; Synonymous substitution ; Orthologous sequences ; Nonsynonymous SNPs

刊名：BMC Plant Biology

出版年：2014

作者：Shan He (1)
Xu-Fang Liang (1)
Ling Li (1)
Jian Sun (1)
Zheng-Yong Wen (1)
Xiao-Yan Cheng (1)
Ai-Xuan Li (1)
Wen-Jing Cai (1)
Yu-Hui He (1)
Ya-Ping Wang (2)
Ya-Xiong Tao (3)
Xiao-Chen Yuan (1)

1. Key Laboratory of Freshwater Animal Breeding ; Ministry of Agriculture ; College of Fisheries ; Huazhong Agricultural University ; Hubei Collaborative Innovation Center for Freshwater Aquaculture ; 430070 ; Wuhan ; China
2. State Key Laboratory of Freshwater Ecology and Biotechnology ; Institute of Hydrobiology ; Chinese Academy of Sciences ; 430072 ; Wuhan ; China
3. Department of Anatomy ; Physiology ; and Pharmacology ; College of Veterinary Medicine ; Auburn University ; Auburn ; AL ; 36849-5519 ; USA

关键词：Food habit transition ; Carnivory ; Herbivory ; Grass carp ; Transcriptome sequencing

刊名：BMC Genomics

出版年：2015

作者：Nourollah Ahmadi (1)
Alain Audebert (1)
Malcolm J Bennett (2)
Anthony Bishopp (2)
Antonio Costa de Oliveira (3)
Brigitte Courtois (1)
Abdala Diedhiou (4) (5)
Anne Di茅vart (1)
Pascal Gantet (6) (7)
Alain Ghesqui猫re (8)
Emmanuel Guiderdoni (1)
Amelia Henry (9)
Yoshiaki Inukai (10)
Leon Kochian (11)
Laurent Laplaze (5) (8)
Mikael Lucas (8)
Doan Trung Luu (12)
Baboucarr Manneh (13)
Xiaorong Mo (14)
Raveendran Muthurajan (15)
Christophe P茅rin (1)
Adam Price (16)
Sabariappan Robin (15)
Herv茅 Sentenac (12)
Bassirou Sine (17) (5)
Yusaku Uga (18)
Anne Ali茅nor V茅ry (12)
Matthias Wissuwa (19)
Ping Wu (14)
Jian Xu (20)

1. CIRAD ; UMR AGAP ; 34398 ; Montpellier Cedex 5 ; France
2. Centre for Plant Integrative Biology ; University of Nottingham ; Loughborough ; LE12 5RD ; UK
3. UFPel ; Plant Genomics and Breeding Center ; Pelotas ; Brazil
4. Universit茅 Cheikh Anta Diop (UCAD) ; D茅partement de Biologie V茅g茅tale ; Laboratoire Commun de Microbiologie IRD/ISRA/UCAD ; Centre de Recherche de Bel Air - BP 1386 CP 18524 ; Dakar ; S茅n茅gal
5. Laboratoire Mixte International Adaptation des Plantes et microorganismes associ茅s aux Stress Environnementaux (LAPSE) ; Centre de Recherche de Bel Air - BP 1386 CP 18524 ; Dakar ; S茅n茅gal
6. Universit茅 Montpellier 2 ; UMR DIADE ; Montpellier ; France
7. IRD ; LMI RICE ; USTH ; Agronomical Genetics Institute ; Hanoi ; Vietnam
8. IRD ; UMR DIADE ; Montpellier ; France
9. IRRI ; Los Ba帽os ; Philippines
10. International Cooperation Center for Agricultural Education (ICCAE) ; Nagoya University ; Furo-cho ; Chikusa ; Nagoya ; 464-8601 ; Japan
11. Robert W. Holley Center for Agriculture and Health ; USDA-ARS and Department of Plant Biology ; Cornell University ; Ithaca ; NY ; 14853 ; USA
12. Biochimie et Physiologie Mol茅culaire des Plantes ; Institut de Biologie Int茅grative des Plantes ; UMR 5004 CNRS/386 INRA/Montpellier SupAgro/Universit茅 Montpellier 2 ; F-34060 ; Montpellier Cedex 2 ; France
13. Africa Rice Center ; AfricaRice Sahel Regional Station ; B.P. 96 ; St Louis ; Senegal
14. State Key Laboratory of Plant Physiology and Biochemistry ; College of Life Science ; Zhejiang University ; Hangzhou ; 310058 ; China
15. Tamil Nadu Agricultural University ; 641003 ; Coimbatore ; India
16. University of Aberdeen ; Aberdeen ; AB24 3UU ; UK
17. ISRA ; CERAAS ; Thi猫s ; Senegal
18. National Institute of Agrobiological Sciences (NIAS) ; 2-1-2 Kannondai ; Tsukuba ; Ibaraki ; 305-8602 ; Japan
19. Japan International Research Center for Agricultural Sciences (JIRCAS) ; 1-1 Ohwashi ; Tsukuba ; 305-8686 ; Japan
20. Department of Biological Sciences and NUS Centre for BioImaging Sciences ; Faculty of Science ; National University of Singapore ; Singapore ; 117543 ; Singapore

关键词：Ideotype ; Breeding ; Phenotyping ; Genetic and molecular controls ; Rice ; Roots

刊名：Rice

出版年：2014