作者：Xiaohui Liu (1)
Xiaoe Jia (2)
Hao Yuan (1)
Ke Ma (2)
Yi Chen (3)
Yi Jin (3)
Min Deng (4)
Weijun Pan (2)
Saijuan Chen (1)
Zhu Chen (1)
Hugues de The (1) (5)
Leonard I Zon (6)
Yi Zhou (6)
Jun Zhou (1)
Jun Zhu (1) (5)

1. CNRS-LIA124 ; Sino-French Research Center for Life Sciences and Genomics ; State Key Laboratory of Medical Genomics ; Rui Jin Hospital ; Shanghai Jiao Tong University School of Medicine ; Shanghai ; 200025 ; China
2. Key Laboratory of Stem Cell Biology ; Institute of Health Sciences ; Shanghai Institutes for Biological Sciences ; Chinese Academy of Sciences & Shanghai Jiao Tong University School of Medicine ; Shanghai ; 200031 ; China
3. Laboratory of Development and Diseases ; State Key Laboratory for Medical Genomics ; Shanghai Institute of Hematology ; Rui Jin Hospital ; Shanghai Jiao Tong University School of Medicine ; Shanghai ; 200025 ; China
4. Institute of Health Sciences ; Shanghai Institutes for Biological Sciences ; Chinese Academy of Sciences & Shanghai Jiao Tong University School of Medicine ; Shanghai ; 200031 ; China
5. Equipe Labellis茅e No. 11 Ligue Nationale Contre le Cancer ; H么pital St. Louis ; Universit茅 de Paris 7/INSERM/CNRS UMR 944/7212 ; 75475 ; Paris ; France
6. Stem Cell Program ; Hematology/Oncology Program at Children鈥檚 Hospital Boston ; Harvard Medical School ; Boston ; MA ; 02114 ; USA

关键词：Dnmt1 ; C/ebpa ; HSPCs ; Zebrafish

刊名：Journal of Hematology & Oncology

出版年：2015

作者：Leif Andersson (1) (2)
Alan L Archibald (3)
Cynthia D Bottema (4)
Rudiger Brauning (5)
Shane C Burgess (6)
Dave W Burt (3)
Eduardo Casas (7)
Hans H Cheng (8)
Laura Clarke (9)
Christine Couldrey (10)
Brian P Dalrymple (11)
Christine G Elsik (12)
Sylvain Foissac (13)
Elisabetta Giuffra (14)
Martien A Groenen (15)
Ben J Hayes (16) (17) (18)
LuSheng S Huang (19)
Hassan Khatib (20)
James W Kijas (11)
Heebal Kim (21)
Joan K Lunney (22)
Fiona M McCarthy (23)
John C McEwan (24)
Stephen Moore (25)
Bindu Nanduri (26)
Cedric Notredame (27)
Yniv Palti (28)
Graham S Plastow (29)
James M Reecy (30)
Gary A Rohrer (31)
Elena Sarropoulou (32)
Carl J Schmidt (33)
Jeffrey Silverstein (34)
Ross L Tellam (35)
Michele Tixier-Boichard (14)
Gwenola Tosser-Klopp (13)
Christopher K Tuggle (30)
Johanna Vilkki (36)
Stephen N White (37) (38)
Shuhong Zhao (39)
Huaijun Zhou (40)
The FAANG Consortium

1. Science for Life Laboratory Uppsala ; Department of Medical Biochemistry and Microbiology ; Uppsala University ; Uppsala ; SE 751 23 ; Sweden
2. Department of Animal Breeding and Genetics ; Swedish University of Agricultural Sciences ; Uppsala ; SE-750 07 ; Sweden
3. The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Edinburgh ; EH25 9RG ; UK
4. School of Animal and Veterinary Sciences ; The University of Adelaide ; Roseworthy ; SA ; 5371 ; Australia
5. Invermay Agricultural Centre ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
6. College of Agriculture and Life Sciences ; University of Arizona ; Tucson ; AZ ; 85719 ; USA
7. National Animal Disease Center ; United States Department of Agriculture ; Agricultural Research Service ; Ames ; IA ; 50010 ; USA
8. Avian Disease and Oncology Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; East Lansing ; MI ; 48823 ; USA
9. European Molecular Biology Laboratory European Bioinformatics Institute ; Hinxton ; Cambridge ; CB10 1SD ; UK
10. Livestock Improvement Corporation ; Hamilton ; 3284 ; New Zealand
11. Agriculture Flagship ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Brisbane ; Australia
12. Division of Animal Sciences ; University of Missouri ; Columbia ; MO ; 65211 ; USA
13. UMR1388 G茅n茅tique ; Physiologie et Syst猫mes d鈥橢levage (GenPhySE) ; French National Institute for Agricultural Research (INRA) ; F-31326 ; Castanet-Tolosan ; France
14. UMR1313 G茅n茅tique Animale et Biologie Int茅grative (GABI) ; French National Institute for Agricultural Research (INRA) ; F-78352 ; Jouy-en-Josas ; France
15. Animal Breeding and Genomics Centre ; Wageningen University ; 6708聽PB ; Wageningen ; The Netherlands
16. Biosciences Research Division ; Department of Environment and Primary Industries Victoria ; Bundoora ; 3083 ; Australia
17. Dairy Futures Cooperative Research Centre ; Bundoora ; 3083 ; VIC ; Australia
18. La Trobe University ; Bundoora ; 3086 ; VIC ; Australia
19. Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China ; Jiangxi Agricultural University ; Jiangxi ; 330029 ; People鈥檚 Republic of China
20. Department of Animal Sciences ; University of Wisconsin-Madison ; Madison ; WI ; 53706 ; USA
21. Department of Agricultural Biotechnology ; Seoul National University ; Seoul ; Republic of Korea
22. Animal Parasitic Diseases Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; Beltsville ; MD ; 20705 ; USA
23. School of Animal and Comparative Biomedical Sciences ; University of Arizona ; Tucson ; AZ ; 85721 ; USA
24. Animal Productivity Group ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
25. Centre for Animal Science ; Queensland Alliance for Agriculture & Food Innovation ; University of Queensland ; St Lucia ; QLD ; 4067 ; Australia
26. Department of Basic Sciences ; College of Veterinary Medicine and Institute for Genomics ; Biocomputing and Biotechnology ; Mississippi State University ; Mississippi ; MS ; 39762 ; USA
27. Comparative Bioinformatics ; Centre for Genomic Regulation (CRG) ; Dr. Aiguader 88 ; 08003 ; Barcelona ; Spain
28. National Center for Cool and Cold Water Aquaculture ; United States Department of Agriculture ; Agricultural Research Service ; Kearneysville ; WV ; 25430 ; USA
29. Livestock Gentec Centre ; Department of Agricultural ; Food and Nutritional Science ; University of Alberta ; Edmonton ; Alberta ; T6G 2C8 ; Canada
30. Department of Animal Science ; Iowa State University ; Ames ; IA ; 50011 ; USA
31. US Meat Animal Research Center ; United States Department of Agriculture ; Agricultural Research Service ; Clay Center ; NE ; 68933 ; USA
32. Institute of Marine Biology ; Biotechnology and Aquaculture ; Hellenic Centre for Marine Research ; 71003 ; Heraklion ; Greece
33. Department of Animal and Food Sciences ; University of Delaware ; Newark ; DE ; 19716 ; USA
34. Animal Production and Protection ; United States Department of Agriculture ; Agricultural Research Service Aquaculture ; Beltsville ; MD ; 20705 ; USA
35. CSIRO Agriculture ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Australia
36. Green Technology ; Natural Resources Institute Finland ; 31600 ; Jokioinen ; Finland
37. Animal Disease Research Unit ; United States Department of Agriculture ; Agricultural Research Service ; Pullman ; WA ; 99164-6630 ; USA
38. Department of Veterinary Microbiology and Pathology ; Washington State University ; Pullman ; WA ; 99164-7040 ; USA
39. Key Laboratory of Agricultural Animal Genetics ; Breeding and Reproduction of Ministry of Education of China ; Huazhong Agricultural University ; Wuhan ; Hubei ; 430070 ; People鈥檚 Republic of China
40. Department of Animal Science ; University of California ; Davis ; CA ; 95616 ; USA

刊名：Genome Biology

出版年：2015

作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Jie Lv (1)
Hui Liu (1)
Shihuan Yu (2)
Hongbo Liu (1)
Wei Cui (1)
Yang Gao (1)
Tao Zheng (1)
Geng Qin (1)
Jing Guo (1)
Tiebo Zeng (1)
Zhengbin Han (1)
Yan Zhang (3)
Qiong Wu (1)

1. School of Life Science and Technology ; State Key Laboratory of Urban Water Resource and Environment ; Harbin Institute of Technology ; Harbin ; 150001 ; China
2. Department of Respiratory Medicine ; the First Affiliated Hospital of Harbin Medical University ; Harbin ; 150001 ; Heilongjiang ; China
3. College of Bioinformatics Science and Technology ; Harbin Medical University ; Harbin ; 150081 ; China

关键词：Long non ; coding RNAs ; Pre ; implantation embryonic development ; Mouse ; Single ; cell sequencing ; RNA sequencing

刊名：Molecular Genetics and Genomics

出版年：2015

作者：Ru Zhang (1)
Qiang Wang (1)
Lin Zhang (1)
Saijuan Chen (1)

1. State Key Laboratory for Medical Genomics ; Shanghai Institute of Hematology ; Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine ; Shanghai ; 200025 ; China

关键词：factor IX ; hemophilia B ; liver ; specific regulatory elements ; hydrodynamic gene transfer

刊名：Frontiers of Medicine

出版年：2015

作者：Bas E Dutilh (1) (2) (3) (4)
Cristiane C Thompson (5)
Ana CP Vicente (5)
Michel A Marin (5)
Clarence Lee (7)
Genivaldo GZ Silva (2) (6)
Robert Schmieder (2) (6)
Bruno GN Andrade (5)
Luciane Chimetto (4)
Daniel Cuevas (2) (7)
Daniel R Garza (2)
Iruka N Okeke (8)
Aaron Oladipo Aboderin (9)
Jessica Spangler (7)
Tristen Ross (7)
Elizabeth A Dinsdale (1)
Fabiano L Thompson (4)
Timothy T Harkins (7)
Robert A Edwards (1) (10) (2) (4) (6)

1. Department of Biology ; San Diego State University ; San Diego ; CA ; USA
2. Department of Computer Science ; San Diego State University ; San Diego ; CA ; USA
3. Centre for Molecular and Biomolecular Informatics ; Radboud Institute for Molecular Life Sciences ; Radboud University Medical Centre ; Nijmegen ; The Netherlands
4. Department of Marine Biology ; Institute of Biology ; Federal University of Rio de Janeiro ; Rio de Janeiro ; Brazil
5. Laboratory of Molecular Genetics of Microorganisms ; Oswaldo Cruz Institute ; FIOCRUZ ; Rio de Janeiro ; Brazil
7. Advanced Applications Group ; Life Technologies ; Inc ; Beverly ; MA ; USA
6. Computational Science Research Center ; San Diego State University ; San Diego ; CA ; USA
8. Department of Biology ; Haverford College ; Haverford ; PA ; USA
9. Department of Medical Microbiology & Parasitology ; College of Health Sciences ; Obafemi Awolowo University ; Ile-Ife ; Nigeria
10. Mathematics and Computer Science Division ; Argonne National Laboratory ; Argonne ; IL ; USA

关键词：Functional genomics ; Mobile elements ; Phages ; Niche adaptation ; Vibrio ; Genome evolution ; Genotype ; phenotype association ; Random forest

刊名：BMC Genomics

出版年：2014

作者：Xianquan Zhan (1) (2) (3) (4)
Xiaowei Wang (1) (2) (3)
Ying Long (1) (2) (3)
Dominic M Desiderio (5)

1. Key Laboratory of Cancer Proteomics of Chinese Ministry of Health ; Xiangya Hospital ; Central South University ; 87 Xiangya Road ; Changsha ; Hunan ; 410008 ; P. R. China
2. Hunan Engineering Laboratory for Structural Biology and Drug Design ; Xiangya Hospital ; Central South University ; 87 Xiangya Road ; Changsha ; Hunan ; 410008 ; P. R. China
3. State Local Joint Engineering Laboratory for Anticancer Drugs ; Xiangya Hospital ; Central South University ; 87 Xiangya Road ; Changsha ; Hunan ; 410008 ; P. R. China
4. The State Key Laboratory of Medical Genetics ; Central South University ; 88 Xiangya Road ; Changsha ; Hunan ; 410008 ; P. R. China
5. The Charles B. Stout Neuroscience Mass Spectrometry Laboratory ; Department of Neurology ; College of Medicine ; University of Tennessee Health Science Center ; 847 Monroe Avenue ; Memphis ; TN ; 38163 ; USA

关键词：Nonfunctional pituitary adenoma ; Proteome ; Heterogeneity ; Two ; dimensional gel electrophoresis ; Mass spectrometry ; Differentially expressed protein ; Pathway network

刊名：BMC Medical Genomics

出版年：2014

作者：Yun Bai (22)
Zhuangzhi Zhang (23)
Lei Jin (22)
Hui Kang (22)
Yongqiang Zhu (22)
Lu Zhang (22)
Xia Li (22)
Fengshou Ma (22)
Li Zhao (23)
Baoxin Shi (23)
Jun Li (24)
Donald P McManus (25)
Wenbao Zhang (24)
Shengyue Wang (22)

22. Shanghai-MOST Key Laboratory of Health and Disease Genomics ; Chinese National Human Genome Center at Shanghai ; 250 Bibo Road ; Shanghai ; 201203 ; China
23. Veterinary Research Institute ; Xinjiang Academy of Animal Sciences ; 151 East-Kelamayi Street ; Urumqi ; Xinjiang ; 830000 ; China
24. State Key Laboratory Incubation Base of Xinjiang Major Diseases Research ; Clinical Medical Research Institute ; The First Affiliated Hospital of Xinjiang Medical University ; No. 1 Liyushan Road ; Urumqi ; Xinjiang ; 830054 ; China
25. Molecular Parasitology Laboratory ; QIMR Berghofer Institute of Medical Research ; Brisbane ; QLD ; Australia

关键词：Echinococcus granulosus ; microRNA ; Deep sequencing ; Differential expression ; Life cycle stage development

刊名：BMC Genomics

出版年：2014

作者：Xiao-Ou Zhang (8)
Qing-Fei Yin (9)
Hai-Bin Wang (10)
Yang Zhang (9)
Tian Chen (9)
Ping Zheng (11)
Xuhua Lu (10)
Ling-Ling Chen (9)
Li Yang (8)

8. Key Laboratory of Computational Biology ; CAS-MPG Partner Institute for Computational Biology ; Shanghai Institutes for Biological Sciences ; Chinese Academy of Sciences ; Shanghai ; 200031 ; China
9. State Key Laboratory of Molecular Biology ; Institute of Biochemistry and Cell Biology ; Shanghai Institutes for Biological Sciences ; Chinese Academy of Sciences ; Shanghai ; 200031 ; China
10. Department of Orthopedic Surgery ; Changzheng Hospital ; Second Military Medical University ; Shanghai ; 200003 ; China
11. State Key Laboratory of Genetic Resources and Evolution ; Kunming Institute of Zoology ; Chinese Academy of Sciences ; Kunming ; Yunnan ; 650223 ; China

关键词：lncRNA ; sno ; lncRNA ; Alternative splicing ; Species ; specific ; PWS

刊名：BMC Genomics

出版年：2014

作者：Yumin Nie (3)
Xiangfei Cheng (3)
Jiao Chen (3)
Xiao Sun (3)

3. State Key Laboratory of Bioelectronics ; School of Biological Science & Medical Engineering ; Southeast University ; 210096 ; Nanjing ; China

关键词：Nucleosome occupancy ; Transcription factor binding site ; Clustering

刊名：BMC Genomics

出版年：2014