作者：Lia Di (13)
Pedro E Pagan (13)
Daniel Packer (14)
Che L Martin (15)
Saymon Akther (13)
Girish Ramrattan (13)
Emmanuel F Mongodin (17)
Claire M Fraser (17)
Steven E Schutzer (18)
Benjamin J Luft (19)
Sherwood R Casjens (20)
Wei-Gang Qiu (13) (15) (16) (21)

13. Department of Biological Sciences ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
14. Department of Computer Science ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
15. Department of Biology ; The Graduate Center ; City University of New York ; 10016 ; New York ; USA
17. Institute for Genome Sciences ; University of Maryland School of Medicine ; 21201 ; Baltimore ; MD ; USA
18. Department of Medicine ; New Jersey Medical School ; Rutgers ; The State University of New Jersey ; 07103 ; Newark ; NJ ; USA
19. Department of Medicine ; Health Science Center ; Stony Brook University ; 11794 ; Stony Brook ; NY ; USA
20. Department of Pathology ; Division of Molecular Cell Biology and Immunology ; University of Utah School of Medicine ; 84112 ; Salt Lake City ; UT ; USA
16. Center for Translational and Basic Research ; Hunter College ; The City University of New York ; 10065 ; New York ; NY ; USA
21. Department of Biological Sciences ; Hunter College of the City University of New York ; 695 Park Avenue ; 10065 ; New York ; NY ; USA

关键词：Lyme disease ; Vector ; borne relapsing fever ; Genome browser ; Recombination ; Population genomics

刊名：BMC Bioinformatics

出版年：2014

作者：Danny Challis (1) (2) (3)
Lilian Antunes (1) (2) (4)
Erik Garrison (5)
Eric Banks (6)
Uday S Evani (1) (2) (7)
Donna Muzny (1) (2)
Ryan Poplin (6)
Richard A Gibbs (1) (2)
Gabor Marth (5) (8)
Fuli Yu (1) (2) (9)

1. Human Genome Sequencing Center ; Baylor College of Medicine ; Houston ; TX ; 77030 ; USA
2. Department of Molecular and Human Genetics ; Baylor College of Medicine ; Houston ; TX ; 77030 ; USA
3. Present address ; Monsanto Company ; Ankeny ; IA ; 50021 ; USA
4. Present address ; Washington University School of Medicine ; Saint Louis ; MO ; 63110 ; USA
5. Department of Biology ; Boston College ; Wellcome Trust Sanger Institute ; Chestnut Hill ; MA ; 02467 ; USA
6. Program in Medical and Population Genetics ; Broad Institute of Harvard and MIT ; Cambridge ; MA ; 02142 ; USA
7. Present address ; New York Genome Center ; New York ; NY ; 10013 ; USA
8. Present address ; Department of Human Genetics and Utah Center for Genetic Discovery ; University of Utah School of Medicine ; Salt Lake City ; UT ; 84112 ; USA
9. Institute of Neurology ; Tianjin Medical University General Hospital ; Tianjin ; 300052 ; China

关键词：INDEL ; 1000 Genomes Project ; Distribution ; Mutagenesis

刊名：BMC Genomics

出版年：2015

作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Sunjin Moon (1) (12) (2)
Tae-Hun Kim (3)
Kyung-Tai Lee (3)
Woori Kwak (4) (5)
Taeheon Lee (1)
Si-Woo Lee (3)
Myung-Jick Kim (6)
Kyuho Cho (7)
Namshin Kim (8)
Won-Hyong Chung (8)
Samsun Sung (5)
Taesung Park (9)
Seoae Cho (5)
Martien AM Groenen (10)
Rasmus Nielsen (11)
Yuseob Kim (2)
Heebal Kim (1) (4) (5)

1. Department of Agricultural biotechnology ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
12. Current address ; Department of Genome Sciences ; University of Washington ; Seattle ; WA ; USA
2. Department of Life Science and Division of EcoScience ; Ewha Womans University ; Seoul ; 120-750 ; Republic of Korea
3. Animal Genomics and Bioinformatics Division ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; 441-706 ; Republic of Korea
4. Interdisciplinary Program in Bioinformatics ; Seoul National University ; Seoul ; 151-747 ; Republic of Korea
5. C&K Genomics ; Seoul National University Research Park ; Seoul ; 151-919 ; Republic of Korea
6. Animal Genetic Resources Station ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; 441-706 ; Republic of Korea
7. Swine Science Division ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; 441-706 ; Republic of Korea
8. Korean Bioinformation Center ; Korea Research Institute of Bioscience and Biotechnology ; Daejeon ; 305-806 ; Republic of Korea
9. Department of Statistics ; Seoul National University ; Seoul ; Republic of Korea
10. Animal Breeding and Genomics Centre ; Wageningen University ; De Elst 1 ; 6708 WD ; Wageningen ; The Netherlands
11. Department of Integrative Biology and Department of Statistics ; University of California Berkeley ; Berkeley ; CA ; 94820 ; USA

关键词：Pig ; Domestication ; Selective sweep ; Directional selection ; Quantitative traits

刊名：BMC Genomics

出版年：2015

作者：Elizabeth A. Guancial MD (1)
Jonathan E. Rosenberg MD (2)

1. Division of Hematology/Oncology ; Department of Medicine ; University of Rochester Medical Center School of Medicine and Dentistry ; 601 Elmwood Ave ; Box 704 ; Rochester ; NY ; 14642 ; USA
2. Genitourinary Oncology Service ; Memorial Sloan-Kettering Cancer Center ; New York ; NY ; 10065 ; USA

关键词：Bladder cancer ; Urothelial carcinoma ; Genomics ; Genome sequencing ; Mutations ; Molecular targets ; Targeted therapy ; Chemotherapy ; Platinum

刊名：Current Treatment Options in Oncology

出版年：2015

作者：Li Xu (1) (2)
He Huang (3)
Wei Wei (2)
Yi Zhong (10) (3)
Biao Tang (4)
Hua Yuan (3)
Li Zhu (2)
Weiyi Huang (1)
Mei Ge (2)
Shen Yang (3)
Huajun Zheng (5)
Weihong Jiang (3)
Daijie Chen (2) (6)
Guo-Ping Zhao (3) (4) (5) (7)
Wei Zhao (3) (4) (8) (9)

1. Nanjing Agricultural University ; Nanjing ; 210095 ; China
2. Shanghai Laiyi Center for Biopharmaceutical R&D ; Shanghai ; 200240 ; China
3. CAS Key Laboratory of Synthetic Biology ; Institute of Plant Physiology and Ecology ; Shanghai Institutes for Biological Sciences ; Chinese Academy of Sciences ; Shanghai ; 200031 ; China
10. Computational Biology Center ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA
4. State Key Laboratory of Genetic Engineering ; Department of Microbiology ; School of Life Sciences and Institute of Biomedical Sciences ; Fudan University ; Shanghai ; 200433 ; China
5. Shanghai-MOST Key Laboratory of Disease and Health Genomics ; Chinese National Human Genome Center at Shanghai ; Shanghai ; 201203 ; China
6. Shanghai Institute of Pharmaceutical Industry ; Shanghai ; 200040 ; China
7. Department of Microbiology and Li Ka Shing Institute of Health Sciences ; The Chinese University of Hong Kong ; Prince of Wales Hospital ; Shatin ; New Territories ; Hong Kong ; SAR ; China
8. China HKY Gene Technology Company Ltd ; Shenzhen ; Guangdong ; 518057 ; China
9. Medical College ; Shenzhen University ; Shenzhen ; Guangdong ; 518060 ; China

关键词：Amycolatopsis orientalis ; Complete genome sequencing ; Molecular taxonomic characteristics ; Vancomycin biosynthesis

刊名：BMC Genomics

出版年：2014

作者：Jonathan J Havel (1)
Timothy A Chan (1) (2)

1. Human Oncology and Pathogenesis Program ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA
2. Department of Radiation Oncology ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA

刊名：Genome Biology

出版年：2015

作者：Idan Efroni (1)
Pui-Leng Ip (1)
Tal Nawy (1)
Alison Mello (1)
Kenneth D Birnbaum (1)

1. Center for Genomics and Systems Biology ; New York University ; 12 Waverly Place ; New York ; 10003 ; USA

刊名：Genome Biology

出版年：2015

作者：Aleksey V Zimin (1)
Adam S Cornish (2)
Mnirnal D Maudhoo (2)
Robert M Gibbs (2)
Xiongfei Zhang (2)
Sanjit Pandey (2)
Daniel T Meehan (2)
Kristin Wipfler (2)
Steven E Bosinger (3)
Zachary P Johnson (3)
Gregory K Tharp (3)
Guillaume Mar莽ais (1)
Michael Roberts (1)
Betsy Ferguson (4)
Howard S Fox (5)
Todd Treangen (6) (7)
Steven L Salzberg (6)
James A Yorke (1)
Robert B Norgren Jr (2)

1. Institute for Physical Science and Technology ; University of Maryland ; College Park ; Maryland ; 20742 ; USA
2. Department of Genetics ; Cell Biology and Anatomy ; University of Nebraska Medical Center ; Omaha ; Nebraska ; 68198 ; USA
3. Non-Human Primate Genomics Core ; Yerkes National Primate Research Center ; Robert W. Woodruff Health Sciences Center ; Emory University ; Atlanta ; Georgia ; 30322 ; USA
4. Division of Neurosciences ; Primate Genetics Program ; Oregon National Primate Research Center ; Oregon Health & Sciences University ; Beaverton ; Oregon ; 97006 ; USA
5. Department of Pharmacology and Experimental Neuroscience ; University of Nebraska Medical Center ; Omaha ; Nebraska ; 68198 ; USA
6. Center for Computational Biology and Department of Biomedical Engineering ; Johns Hopkins University School of Medicine ; Baltimore ; Maryland ; 21205 ; USA
7. National Biodefense Analysis and Countermeasures Center ; Frederick ; MD ; 21702 ; USA

关键词：Macaca mulatta ; Rhesus macaque ; Genome ; Assembly ; Annotation ; Transcriptome ; Next ; generation sequencing

刊名：Biology Direct

出版年：2014

作者：A Rose Brannon (1)
Efsevia Vakiani (1)
Brooke E Sylvester (2)
Sasinya N Scott (1)
Gregory McDermott (1) (7)
Ronak H Shah (1)
Krishan Kania (2)
Agnes Viale (5)
Dayna M Oschwald (6)
Vladimir Vacic (6)
Anne-Katrin Emde (6)
Andrea Cercek (3)
Rona Yaeger (3)
Nancy E Kemeny (3)
Leonard B Saltz (3)
Jinru Shia (1)
Michael I D鈥橝ngelica (4)
Martin R Weiser (4)
David B Solit (2) (3) (7)
Michael F Berger (1) (2) (7)

1. Department of Pathology ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA
2. Human Oncology and Pathogenesis Program ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA
7. Weill Cornell Medical College ; New York ; NY ; 10065 ; USA
5. Genomics Core Laboratory ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA
6. New York Genome Center ; New York ; NY ; 10065 ; USA
3. Department of Medicine ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA
4. Department of Surgery ; Memorial Sloan Kettering Cancer Center ; New York ; NY ; 10065 ; USA

刊名：Genome Biology

出版年：2014