作者： Zhou Zhang ; Yinan Zheng ; Xu Zhang ; Cong Liu ; Brian Thomas Joyce…

刊名：Human Genetics

出版年：2016

作者：Sunjin Moon (1) (12) (2)
Tae-Hun Kim (3)
Kyung-Tai Lee (3)
Woori Kwak (4) (5)
Taeheon Lee (1)
Si-Woo Lee (3)
Myung-Jick Kim (6)
Kyuho Cho (7)
Namshin Kim (8)
Won-Hyong Chung (8)
Samsun Sung (5)
Taesung Park (9)
Seoae Cho (5)
Martien AM Groenen (10)
Rasmus Nielsen (11)
Yuseob Kim (2)
Heebal Kim (1) (4) (5)

1. Department of Agricultural biotechnology ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
12. Current address ; Department of Genome Sciences ; University of Washington ; Seattle ; WA ; USA
2. Department of Life Science and Division of EcoScience ; Ewha Womans University ; Seoul ; 120-750 ; Republic of Korea
3. Animal Genomics and Bioinformatics Division ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; 441-706 ; Republic of Korea
4. Interdisciplinary Program in Bioinformatics ; Seoul National University ; Seoul ; 151-747 ; Republic of Korea
5. C&K Genomics ; Seoul National University Research Park ; Seoul ; 151-919 ; Republic of Korea
6. Animal Genetic Resources Station ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; 441-706 ; Republic of Korea
7. Swine Science Division ; National Institute of Animal Science ; Rural Development Administration ; Suwon ; 441-706 ; Republic of Korea
8. Korean Bioinformation Center ; Korea Research Institute of Bioscience and Biotechnology ; Daejeon ; 305-806 ; Republic of Korea
9. Department of Statistics ; Seoul National University ; Seoul ; Republic of Korea
10. Animal Breeding and Genomics Centre ; Wageningen University ; De Elst 1 ; 6708 WD ; Wageningen ; The Netherlands
11. Department of Integrative Biology and Department of Statistics ; University of California Berkeley ; Berkeley ; CA ; 94820 ; USA

关键词：Pig ; Domestication ; Selective sweep ; Directional selection ; Quantitative traits

刊名：BMC Genomics

出版年：2015

作者：Doori Park (1)
Je Won Jung (1)
Beom-Soon Choi (2)
Murukarthick Jayakodi (3)
Jeongsoo Lee (2)
Jongsung Lim (2)
Yeisoo Yu (4)
Yong-Soo Choi (5)
Myeong-Lyeol Lee (5)
Yoonseong Park (6)
Ik-Young Choi (2)
Tae-Jin Yang (3)
Owain R Edwards (7)
Gyoungju Nah (3)
Hyung Wook Kwon (1)

1. Biomodulation Major ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
2. National Instrumentation Center for Environmental Management ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-742 ; Republic of Korea
3. Department of Plant Science ; College of Agriculture and Life Sciences ; Seoul National University ; Seoul ; 151-921 ; Republic of Korea
4. Arizona Genomics Institute ; University of Arizona ; Tucson ; Arizona ; 85721 ; USA
5. National Institute of Agricultural Biotechnology ; Rural development Administration ; Suwon ; 441-707 ; Republic of Korea
6. Department of Entomology ; Kansas State University ; Manhattan ; Kansas ; USA
7. CSIRO Ecosystem Sciences ; Centre for Environment and Life Sciences ; Underwood Avenue ; Floreat ; WA ; 6014 ; Australia

关键词：Apis cerana ; Asian honey bee ; Genome ; Social insect ; Chemosensory receptors ; Honey bee immunity

刊名：BMC Genomics

出版年：2015

作者：Leif Andersson (1) (2)
Alan L Archibald (3)
Cynthia D Bottema (4)
Rudiger Brauning (5)
Shane C Burgess (6)
Dave W Burt (3)
Eduardo Casas (7)
Hans H Cheng (8)
Laura Clarke (9)
Christine Couldrey (10)
Brian P Dalrymple (11)
Christine G Elsik (12)
Sylvain Foissac (13)
Elisabetta Giuffra (14)
Martien A Groenen (15)
Ben J Hayes (16) (17) (18)
LuSheng S Huang (19)
Hassan Khatib (20)
James W Kijas (11)
Heebal Kim (21)
Joan K Lunney (22)
Fiona M McCarthy (23)
John C McEwan (24)
Stephen Moore (25)
Bindu Nanduri (26)
Cedric Notredame (27)
Yniv Palti (28)
Graham S Plastow (29)
James M Reecy (30)
Gary A Rohrer (31)
Elena Sarropoulou (32)
Carl J Schmidt (33)
Jeffrey Silverstein (34)
Ross L Tellam (35)
Michele Tixier-Boichard (14)
Gwenola Tosser-Klopp (13)
Christopher K Tuggle (30)
Johanna Vilkki (36)
Stephen N White (37) (38)
Shuhong Zhao (39)
Huaijun Zhou (40)
The FAANG Consortium

1. Science for Life Laboratory Uppsala ; Department of Medical Biochemistry and Microbiology ; Uppsala University ; Uppsala ; SE 751 23 ; Sweden
2. Department of Animal Breeding and Genetics ; Swedish University of Agricultural Sciences ; Uppsala ; SE-750 07 ; Sweden
3. The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Edinburgh ; EH25 9RG ; UK
4. School of Animal and Veterinary Sciences ; The University of Adelaide ; Roseworthy ; SA ; 5371 ; Australia
5. Invermay Agricultural Centre ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
6. College of Agriculture and Life Sciences ; University of Arizona ; Tucson ; AZ ; 85719 ; USA
7. National Animal Disease Center ; United States Department of Agriculture ; Agricultural Research Service ; Ames ; IA ; 50010 ; USA
8. Avian Disease and Oncology Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; East Lansing ; MI ; 48823 ; USA
9. European Molecular Biology Laboratory European Bioinformatics Institute ; Hinxton ; Cambridge ; CB10 1SD ; UK
10. Livestock Improvement Corporation ; Hamilton ; 3284 ; New Zealand
11. Agriculture Flagship ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Brisbane ; Australia
12. Division of Animal Sciences ; University of Missouri ; Columbia ; MO ; 65211 ; USA
13. UMR1388 G茅n茅tique ; Physiologie et Syst猫mes d鈥橢levage (GenPhySE) ; French National Institute for Agricultural Research (INRA) ; F-31326 ; Castanet-Tolosan ; France
14. UMR1313 G茅n茅tique Animale et Biologie Int茅grative (GABI) ; French National Institute for Agricultural Research (INRA) ; F-78352 ; Jouy-en-Josas ; France
15. Animal Breeding and Genomics Centre ; Wageningen University ; 6708聽PB ; Wageningen ; The Netherlands
16. Biosciences Research Division ; Department of Environment and Primary Industries Victoria ; Bundoora ; 3083 ; Australia
17. Dairy Futures Cooperative Research Centre ; Bundoora ; 3083 ; VIC ; Australia
18. La Trobe University ; Bundoora ; 3086 ; VIC ; Australia
19. Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China ; Jiangxi Agricultural University ; Jiangxi ; 330029 ; People鈥檚 Republic of China
20. Department of Animal Sciences ; University of Wisconsin-Madison ; Madison ; WI ; 53706 ; USA
21. Department of Agricultural Biotechnology ; Seoul National University ; Seoul ; Republic of Korea
22. Animal Parasitic Diseases Laboratory ; United States Department of Agriculture ; Agricultural Research Service ; Beltsville ; MD ; 20705 ; USA
23. School of Animal and Comparative Biomedical Sciences ; University of Arizona ; Tucson ; AZ ; 85721 ; USA
24. Animal Productivity Group ; AgResearch Limited ; Mosgiel ; 9053 ; New Zealand
25. Centre for Animal Science ; Queensland Alliance for Agriculture & Food Innovation ; University of Queensland ; St Lucia ; QLD ; 4067 ; Australia
26. Department of Basic Sciences ; College of Veterinary Medicine and Institute for Genomics ; Biocomputing and Biotechnology ; Mississippi State University ; Mississippi ; MS ; 39762 ; USA
27. Comparative Bioinformatics ; Centre for Genomic Regulation (CRG) ; Dr. Aiguader 88 ; 08003 ; Barcelona ; Spain
28. National Center for Cool and Cold Water Aquaculture ; United States Department of Agriculture ; Agricultural Research Service ; Kearneysville ; WV ; 25430 ; USA
29. Livestock Gentec Centre ; Department of Agricultural ; Food and Nutritional Science ; University of Alberta ; Edmonton ; Alberta ; T6G 2C8 ; Canada
30. Department of Animal Science ; Iowa State University ; Ames ; IA ; 50011 ; USA
31. US Meat Animal Research Center ; United States Department of Agriculture ; Agricultural Research Service ; Clay Center ; NE ; 68933 ; USA
32. Institute of Marine Biology ; Biotechnology and Aquaculture ; Hellenic Centre for Marine Research ; 71003 ; Heraklion ; Greece
33. Department of Animal and Food Sciences ; University of Delaware ; Newark ; DE ; 19716 ; USA
34. Animal Production and Protection ; United States Department of Agriculture ; Agricultural Research Service Aquaculture ; Beltsville ; MD ; 20705 ; USA
35. CSIRO Agriculture ; Commonwealth Scientific and Industrial Research Organisation ; St Lucia ; 4067 ; Australia
36. Green Technology ; Natural Resources Institute Finland ; 31600 ; Jokioinen ; Finland
37. Animal Disease Research Unit ; United States Department of Agriculture ; Agricultural Research Service ; Pullman ; WA ; 99164-6630 ; USA
38. Department of Veterinary Microbiology and Pathology ; Washington State University ; Pullman ; WA ; 99164-7040 ; USA
39. Key Laboratory of Agricultural Animal Genetics ; Breeding and Reproduction of Ministry of Education of China ; Huazhong Agricultural University ; Wuhan ; Hubei ; 430070 ; People鈥檚 Republic of China
40. Department of Animal Science ; University of California ; Davis ; CA ; 95616 ; USA

刊名：Genome Biology

出版年：2015

作者：Kai-Wei Chang (1) (2)
Nancy A Huang (3)
I-Hsuan Liu (4) (5)
Yi-Hui Wang (4)
Ping Wu (6)
Yen-Tzu Tseng (7)
Michael W Hughes (6) (8)
Ting Xin Jiang (6)
Mong-Hsun Tsai (10) (11) (7)
Chien-Yu Chen (11) (9)
Yen-Jen Oyang (11) (3)
En-Chung Lin (4)
Cheng-Ming Chuong (5) (6)
Shau-Ping Lin (10) (11) (5) (7)

1. Genome and Systems Biology Degree Program ; National Taiwan University ; Taipei ; Taiwan
2. Genome and Systems Biology Degree Program ; Academia Sinica ; Taipei ; Taiwan
3. Department of Computer Science and Information Engineering ; National Taiwan University ; Taipei ; Taiwan
4. Department of Animal Science and Technology ; National Taiwan University ; Taipei ; Taiwan
5. Research Center for Developmental Biology and Regenerative Medicine ; National Taiwan University ; Taipei ; Taiwan
6. Department of Pathology ; School of Medicine ; University of Southern California ; Los Angeles ; CA ; USA
7. Institute of Biotechnology ; National Taiwan University ; Taipei ; Taiwan
8. International Research Center for Wound Repair and Regeneration ; National Cheng-Kung University ; Tainan ; Taiwan
10. Agricultural Biotechnology Research Centre ; Academia Sinica ; Taipei ; Taiwan
11. Center for Systems Biology ; National Taiwan University ; Taipei ; Taiwan
9. Department of Bio-Industrial Mechatronics Engineering ; National Taiwan University ; Taipei ; Taiwan

关键词：Development ; Chicken ; Skin ; Cosine similarity ; Calcium ; Histone modifications

刊名：BMC Genomics

出版年：2015

作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Katherine W Jordan (1)
Shichen Wang (1)
Yanni Lun (1) (2)
Laura-Jayne Gardiner (3)
Ron MacLachlan (4)
Pierre Hucl (4)
Krysta Wiebe (4)
Debbie Wong (5)
Kerrie L Forrest (5)
Andrew G Sharpe (6)
Christine HD Sidebottom (6)
Neil Hall (3)
Christopher Toomajian (1)
Timothy Close (7)
Jorge Dubcovsky (8) (9)
Alina Akhunova (1) (2)
Luther Talbert (10)
Urmil K Bansal (11)
Harbans S Bariana (11)
Matthew J Hayden (5)
Curtis Pozniak (4)
Jeffrey A Jeddeloh (12)
Anthony Hall (3)
Eduard Akhunov (1)
IWGS Consortium

1. Department Plant Pathology ; Kansas State University ; Manhattan ; KS ; 66506 ; USA
2. Integrated Genomics Facility ; Kansas State University ; Manhattan ; KS ; 66506 ; USA
3. Institute of Integrative Biology ; University of Liverpool ; Liverpool ; L69 7ZB ; UK
4. Department Plant Sciences ; University of Saskatchewan ; Saskatoon ; SK ; S7N 5A8 ; Canada
5. Department Environment and Primary Industries ; Bundoora ; VIC ; 3083 ; Australia
6. National Research Council Canada ; 110 Gymnasium Place ; Saskatoon ; SK ; S7N 0聽W9 ; Canada
7. Department Botany & Plant Sciences ; University of California ; Riverside ; CA ; 92521 ; USA
8. Department Plant Sciences ; University of California ; Davis ; CA ; 95616 ; USA
9. Howard Hughes Medical Institute ; Chevy Chase ; MD ; 20815 ; USA
10. Department Plant Sciences & Plant Pathology ; Montana State University ; Bozeman ; MT ; 59717 ; USA
11. Plant Breeding Institute-Cobbitty ; The University of Sydney ; PMB4011 ; Narellan ; NSW ; 2567 ; Australia
12. Roche NimbleGen ; Inc ; Madison ; WI ; 53719 ; USA

刊名：Genome Biology

出版年：2015

作者：Dan E. Parfitt (1)
Keizo Yonemori (2)
Chitose Honsho (3)
Mitsunori Nozaka (2)
Shinya Kanzaki (4)
Akihiko Sato (5)
Masahiko Yamada (6)

1. Department of Plant Sciences ; MS 2 ; University of California ; Davis ; CA ; 95616-8780 ; USA
2. Laboratory of Pomology ; Graduate School of Agriculture ; Kyoto University ; Sakyo-ku ; Kyoto ; 606-8502 ; Japan
3. Laboratory of Pomology ; Faculty of Agriculture ; University of Miyazaki ; Miyazaki ; 889-2192 ; Japan
4. Laboratory of Horticultural Science ; Faculty of Agriculture ; Kinki University ; Nakamachi ; Nara ; 631-8505 ; Japan
5. Grape and Persimmon Research Station ; National Institute of Fruit Tree Science ; National Agriculture and Food Research Organization ; Higashi ; Hiroshima ; 739-2494 ; Japan
6. National Institute of Fruit Tree Science ; National Agriculture and Food Research Organization ; Tsukuba ; 305-8605 ; Japan

关键词：Diospyros kaki ; AFLP polymorphism ; Cluster analysis ; AMOVA ; Structure

刊名：Tree Genetics & Genomes

出版年：2015

作者：Liping Deng (1)
Ruotong Ren (1)
Jun Wu (2)
Keiichiro Suzuki (2)
Juan Carlos Izpisua Belmote (2)
Guang-Hui Liu (1) (3) (4)

1. National Laboratory of Biomacromolecules ; Institute of Biophysics ; Chinese Academy of Sciences ; Beijing ; 100101 ; China
2. Gene Expression Laboratory ; Salk Institute for Biological Studies ; 10010 North Torrey Pines Road ; La Jolla ; CA ; 92037 ; USA
3. Beijing Institute for Brain Disorders ; Beijing ; 100069 ; China
4. Center for Molecular and Translational Medicine ; CMTM ; Beijing ; 100101 ; China

关键词：TALE ; CRISPR/Cas9 ; genome editing ; gene expression ; transcription regulation

刊名：Protein & Cell

出版年：2015

作者：Xiaofen Zong (1)
Maolin Hu (1)
Zongchang Li (1)
Hongbao Cao (2)
Xiaogang Chen (1) (3) (4)
Jinsong Tang (1)

1. Institute of Mental Health ; The Second Xiangya Hospital of Central South University ; Changsha ; 410011 ; China
2. Unit on Statistical Genomics ; National Institute of Mental Health ; NIH ; Bethesda ; 20852 ; USA
3. Key Laboratory of Psychiatry and Mental Health of Hunan Province ; Central South University ; Changsha ; 410011 ; China
4. National Technology of Institute of Psychiatry ; Central South University ; Changsha ; 410011 ; China

关键词：Schizophrenia ; Epigenetics ; DNA methylation ; Reelin ; CatecholO ; methyltransferase

刊名：Chinese Science Bulletin

出版年：2015