作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Kerri L Steenwerth (1)
Amanda K Hodson (2)
Arnold J Bloom (3)
Michael R Carter (4)
Andrea Cattaneo (5)
Colin J Chartres (6)
Jerry L Hatfield (7)
Kevin Henry (8) (9)
Jan W Hopmans (2)
William R Horwath (2)
Bryan M Jenkins (10)
Ermias Kebreab (11)
Rik Leemans (12)
Leslie Lipper (13)
Mark N Lubell (14)
Siwa Msangi (15)
Ravi Prabhu (16)
Matthew P Reynolds (17)
Samuel Sandoval Solis (2)
William M Sischo (18)
Michael Springborn (19)
Pablo Tittonell (20)
Stephen M Wheeler (21)
Sonja J Vermeulen (22)
Eva K Wollenberg (23)
Lovell S Jarvis (24)
Louise E Jackson (2)

1. Crops Pathology and Genetics Research Unit ; Agricultural Research Service ; United States Department of Agriculture (ARS/USDA) ; c/o Department of Viticulture and Enology ; RMI North ; Rm. 1151 ; 595 Hilgard Lane ; Davis ; CA ; 95616 ; USA
2. Department of Land ; Air and Water Resources ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
3. Department of Plant Sciences ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
4. Department of Agricultural and Resource Economics ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
5. Climate Smart Agriculture Project ; Food and Agriculture Organization of the U.N. ; Viale delle Terme di Caracalla ; 00100 ; Rome ; Italy
6. eWater ; University of Canberra Innovation Centre ; Building 22 ; University Drive South ; Bruce ; ACT 2617 ; Australia
7. National Laboratory for Agriculture and the Environment ; ARS/USDA ; Ames ; IA ; USA
8. Where the Rain Falls ; CARE France ; 71 rue Archereau ; Paris ; 75019 ; France
9. School of Global Environmental Sustainability ; Colorado State University ; 108 Johnson Hall ; Fort Collins ; CO ; 80523 ; USA
10. Department of Biological and Agricultural Engineering ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
11. Department of Animal Science ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
12. Environmental Sciences ; Wageningen University ; P.O. Box 47 ; 6700AA ; Wageningen ; the Netherlands
13. Agricultural and Development Economic Analysis Division ; Food and Agriculture Organization of the U.N. ; Viale delle Terme di Caracalla ; 00100 ; Rome ; Italy
14. Department of Environmental Science and Policy ; Center for Environmental Policy and Behavior ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
15. Environment and Production Technology Division ; International Food Policy Research Institute (IFPRI) ; 2033 K St. ; NW ; Washington ; DC ; 20006-1002 ; USA
16. World Agroforestry Center (ICRAF) ; P.O. Box 30677 ; 00100 ; Nairobi ; Kenya
17. Plant ; International Maize and Wheat Improvement Center ; Consultative Group on International Agricultural Research (CGIAR) Apdo ; Postal 6-641 ; 06600 ; Mexico ; D.F. ; Mexico
18. Food- and Water-borne Disease Research Program ; College of Veterinary Medicine ; Washington State University ; PO Box 646610 ; Pullman ; WA ; 99164-6610 ; USA
19. Department of Environmental Science and Policy ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
20. Plant Sciences ; Wageningen University ; P.O. Box 563 ; 6700AN ; Wageningen ; the Netherlands
21. Department of Landscape Architecture ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA
22. Climate Change ; Agriculture and Food Security ; Consultative Group on International Agricultural Research (CGIAR) ; Department of Plant and Environmental Sciences ; University of Copenhagen ; Rolighedsvej 21 ; DK-1958 ; Frederiksberg C ; Denmark
23. Gund Institute for Ecological Economics and Rubenstein School of Environment and Natural Resources ; University of Vermont ; 617 Main Street ; Burlington ; Vermont ; 05405 ; USA
24. Department of Agriculture and Resource Economics ; University of California at Davis ; One Shields Avenue ; Davis ; CA ; 95616 ; USA

刊名：Agriculture & Food Security

出版年：2014

作者：Shengbin Li (1)
Bo Li (2)
Cheng Cheng (1) (2) (4)
Zijun Xiong (2)
Qingbo Liu (1)
Jianghua Lai (1)
Hannah V Carey (5)
Qiong Zhang (2) (6)
Haibo Zheng (1)
Shuguang Wei (1)
Hongbo Zhang (1)
Liao Chang (1) (2)
Shiping Liu (2)
Shanxin Zhang (1)
Bing Yu (1)
Xiaofan Zeng (2)
Yong Hou (2)
Wenhui Nie (7)
Youmin Guo (1)
Teng Chen (1)
Jiuqiang Han (1)
Jian Wang (2) (8)
Jun Wang (10) (2) (9)
Chen Chen (11)
Jiankang Liu (1) (4)
Peter J Stambrook (12)
Ming Xu (13)
Guojie Zhang (2) (9)
M Thomas P Gilbert (14) (15)
Huanming Yang (16) (2) (6) (8)
Erich D Jarvis (17)
Jun Yu (1) (3)
Jianqun Yan (1)

1. Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710049 ; P. R. China
2. BGI-Shenzhen ; Shenzhen ; 518083 ; P. R. China
4. Center for Mitochondrial Biology and Medicine ; The Key Laboratory of Biomedical Information Engineering of Ministry of Education ; School of Life Science and Technology and Frontier Institute of Science and Technology ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710049 ; China
5. University of Wisconsin School of Veterinary Medicine ; Madison ; Wisconsin ; USA
6. BGI-Northwest ; BGI-Shenzhen ; Xi鈥檃n ; 710000 ; P. R. China
7. Kunming Institute of Zoology ; Chinese Academy of Sciences ; Kunming ; Yunnan ; P. R. China
8. James D. Watson Institute of Genome Science ; Hangzhou ; China
10. King Abdulaziz University ; Jeddah ; Saudi Arabia
9. Department of Biology ; University of Copenhagen ; Copenhagen ; Denmark
11. School of Biomedical Sciences ; University of Queensland ; Queensland ; Australia
12. University of Cincinnati College of Medicine ; Cincinnati ; Ohio ; USA
13. College of medicine ; University of Chicago ; Chicago ; USA
14. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴sterVoldgade 5-7 ; 1350 ; Copenhagen ; Denmark
15. Department of Environment and Agriculture ; Trace and Environmental DNA Laboratory ; Curtin University ; Perth ; Western Australia ; 6845 ; Australia
16. Prince Aljawhra Center of Excellence in Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; Saudi Arabia
17. Howard Hughes Medical Institute ; Duke University Medical Center ; Durham ; NC ; 27710 ; USA
3. CAS Key Laboratory of Genome Sciences and Information ; Beijing Institute of Genomics ; Chinese Academy of Sciences ; Beijing ; 100101 ; P.R. China

刊名：Genome Biology

出版年：2014