作者：Xi Yang (1)
Akihiro Hoshino (1)
Takashi Taga (2)
Tomoaki Kunitsu (2)
Yuhachi Ikeda (2)
Takahiro Yasumi (3)
Kenichi Yoshida (4)
Taizo Wada (5)
Kunio Miyake (6)
Takeo Kubota (6)
Yusuke Okuno (7)
Hideki Muramatsu (7)
Yuichi Adachi (1)
Satoru Miyano (8) (9)
Seishi Ogawa (4)
Seiji Kojima (7)
Hirokazu Kanegane (1) (10)

1. Department of Pediatrics ; Graduate School of Medicine and Pharmaceutical Sciences ; University of Toyama ; Toyama ; Japan
2. Department of Pediatrics ; Shiga University of Medical Science ; Otsu ; Japan
3. Department of Pediatrics ; Graduate School of Medicine ; Kyoto University ; Kyoto ; Japan
4. Department of Pathology and Tumor Biology ; Graduate School of Medicine ; Kyoto University ; Kyoto ; Japan
5. Department of Pediatrics ; School of Medicine ; Institute of Medical ; Pharmaceutical and Health Sciences ; Kanazawa University ; Kanazawa ; Japan
6. Department of Epigenetic Medicine ; Interdisciplinary Graduate School of Medicine and Engineering ; University of Yamanashi ; Yamanashi ; Japan
7. Department of Pediatrics ; Nagoya University Graduate School of Medicine ; Nagoya ; Japan
8. Laboratory of DNA Information Analysis ; Human Genome Center ; Institute of Medical Science ; The University of Tokyo ; Tokyo ; Japan
9. Laboratory of Sequence Analysis ; Human Genome Center ; Institute of Medical Science ; The University of Tokyo ; Tokyo ; Japan
10. Department of Pediatrics and Developmental Biology ; Graduate School of Medical and Dental Sciences ; Tokyo Medical and Dental University ; 1-5-45 Yushima ; Bunkyo-ku ; Tokyo ; 113-8519 ; Japan

关键词：Hemophagocytic lymphohistiocytosis ; X ; chromosome inactivation ; X ; linked inhibitor of apoptosis ; X ; linked lymphoproliferative syndrome

刊名：Journal of Clinical Immunology

出版年：2015

作者：Guangdi Li (1) (2)
Supinya Piampongsant (1) (2)
Nuno Rodrigues Faria (3)
Arnout Voet (4)
Andrea-Clemencia Pineda-Pe帽a (2) (5)
Ricardo Khouri (2) (6)
Philippe Lemey (2)
Anne-Mieke Vandamme (2) (7)
Kristof Theys (2)

1. Metabolic Syndrome Research Center ; the Second Xiangya Hospital ; Central South University ; Changsha ; Hunan ; China
2. Rega Institute for Medical Research ; Department of Microbiology and Immunology ; KU Leuven ; Leuven ; Belgium
3. Department of Zoology ; University of Oxford ; Oxford ; OX1-3PS ; UK
4. Zhang IRU ; RIKEN Institute Laboratories ; Hirosawa 2-1 ; Wako-shi ; Saitama ; Japan
5. Clinical and Molecular Infectious Disease Group ; Faculty of Sciences and Mathematics ; Universidad del Rosario ; Bogot谩 ; Colombia
6. LIMI-LIP ; Centro de Pesquisa Gon莽alo Moniz ; FIOCRUZ ; Salvador-Bahia ; Brasil
7. Centro de Mal谩ria e Outras Doen莽as Tropicais and Unidade de Microbiologia ; Instituto de Higiene e Medicina Tropical ; Universidade Nova de Lisboa ; Lisbon ; Portugal

关键词：HIV genome ; Genomic diversity ; Conservation ; Peptide inhibitor ; HIV ; human protein interaction ; HIV phylogenetic tree ; HIV inter ; and inter ; clade genetic diversity ; Selective pressure ; Protein multimerization ; Protein intrinsic disorder

刊名：Retrovirology

出版年：2015

作者：Sachiko Kawashima-Goto (1)
Toshihiko Imamura (1)
Masafumi Seki (2)
Motohiro Kato (2)
Kenichi Yoshida (3)
Atsuya Sugimoto (1)
Daisuke Kaneda (1)
Atsushi Fujiki (4)
Mitsuru Miyachi (1)
Takuya Nakatani (4) (5)
Shinya Osone (1)
Hiroyuki Ishida (1) (5)
Tomohiko Taki (6)
Junko Takita (2)
Yuichi Shiraishi (7)
Kenichi Chiba (7)
Hiroko Tanaka (8)
Satoru Miyano (7) (8)
Seishi Ogawa (3)
Hajime Hosoi (1)

1. Department of Pediatrics ; Kyoto Prefectural University of Medicine ; Graduate School of Medical Science ; Kajii-cho Hirokoji ; Kamigyo-ku ; Kyoto ; 602-8566 ; Japan
2. Department of Pediatrics ; The University of Tokyo ; Tokyo ; Japan
3. Department of Pathology and Tumor Biology ; Kyoto University ; Kyoto ; Japan
4. Department of Pediatrics ; National Hospital Organization Maizuru Medical Center ; Maizuru ; Japan
5. Department of Pediatrics ; Matsushita Memorial Hospital ; Moriguchi ; Japan
6. Department of Molecular Diagnostics and Therapeutics ; Kyoto Prefectural University of Medicine ; Graduate School of Medical Science ; Kyoto ; Japan
7. Laboratory of DNA Information Analysis ; Human Genome Center ; Institute of Medical Science ; The University of Tokyo ; Tokyo ; Japan
8. Laboratory of Sequence Analysis ; Human Genome Center ; Institute of Medical Science ; The University of Tokyo ; Tokyo ; Japan

关键词：ETP ; ALL ; JAK3 ; Acquired UPD ; SNP array ; Whole ; exome sequencing

刊名：International Journal of Hematology

出版年：2015

作者：Akihiro Hoshino (1)
Keiko Nomura (1)
Takeru Hamashima (2)
Tomoya Isobe (3)
Masafumi Seki (4)
Mitsuteru Hiwatari (4)
Kenichi Yoshida (5)
Yuichi Shiraishi (6)
Kenichi Chiba (6)
Hiroko Tanaka (7)
Satoru Miyano (6) (7)
Seishi Ogawa (5)
Junko Takita (4)
Hirokazu Kanegane (1) (8)

1. Department of Pediatrics ; Graduate School of Medicine and Pharmaceutical Sciences ; University of Toyama ; 2630 Sugitani ; Toyama ; Toyama ; 930-0194 ; Japan
2. Department of Pathology ; Graduate School of Medicine and Pharmaceutical Sciences ; University of Toyama ; Toyama ; Japan
3. Student of Tokyo University School of Medicine ; Tokyo ; Japan
4. Department of Pediatrics ; Graduate School of Medicine ; University of Tokyo ; Tokyo ; Japan
5. Department of Pathology and Tumor Biology ; Graduate School of Medicine ; Kyoto University ; Kyoto ; Japan
6. Laboratory of DNA Information Analysis ; Human Genome Center ; Institute of Medical Science ; The University of Tokyo ; Tokyo ; Japan
7. Laboratory of Sequence Analysis ; Human Genome Center ; Institute of Medical Science ; The University of Tokyo ; Tokyo ; Japan
8. Department of Pediatrics and Developmental Biology ; Graduate School of Medical and Dental Sciences ; Tokyo Medical and Dental University ; Tokyo ; Japan

关键词：ALK ; Anaplastic large cell lymphoma ; Aggressive transformation ; RNA sequencing ; TPM3 ; ALK

刊名：International Journal of Hematology

出版年：2015

作者：Josep Basha Gutierrez (20)
Martin Frith (21)
Kenta Nakai (22)

20. Department of Medical Bioinformatics ; Graduate School of Frontier Sciences ; The University of Tokyo ; 5-1-5 Kashiwanoha ; Kashiwa-shi ; Chiba-ken ; 277-8561 ; Japan
21. Computational Biology Research Center ; AIST Tokyo Waterfront Bio-IT Research Building ; 2-4-7 Aomi ; Koto-ku ; Tokyo ; 135-0064 ; Japan
22. Human Genome Center ; The Institute of Medical Science ; The University of Tokyo ; 4-6-1 Shirokane-dai ; Minato-ku ; Tokyo ; 108-8639 ; Japan

关键词：Motif finding ; Genetic Algorithm ; Transcription Factor Binding Site ; Statistical significance

刊名：Lecture Notes in Computer Science

出版年：2015

作者：Takanori Hasegawa (1)
Tomoya Mori (1)
Rui Yamaguchi (2)
Teppei Shimamura (3)
Satoru Miyano (2)
Seiya Imoto (2)
Tatsuya Akutsu (1)

1. Bioinformatics Center ; Institute for Chemical Research ; Kyoto University ; Gokasho ; Kyoto ; 611-0011 Uji ; Japan
2. Human Genome Center ; The Institute of Medical Science ; The University of Tokyo ; 4-6-1 Shirokanedai ; Tokyo ; 108-8639 Minato-ku ; Japan
3. Division of Systems Biology ; Nagoya University Graduate School of Medicine ; 65 Tsurumai-cho ; Nagoya ; 466-8550 Showa-ku ; Japan

关键词：Gene regulatory networks ; Time series analysis ; Systems biology ; Data assimilation ; Monte Carlo

刊名：BMC Systems Biology

出版年：2015

作者：Shintaro Kobayashi (1)
Michihito Sasaki (1)
Ryo Nakao (2)
Agus Setiyono (3)
Ekowati Handharyani (3)
Yasuko Orba (1)
Ibnu Rahmadani (4)
Siswatiana Taha (5)
Sri Adiani (6)
Mawar Subangkit (3)
Ichiro Nakamura (7)
Takashi Kimura (8)
Hirofumi Sawa (1) (10) (9)

1. Division of Molecular Pathobiology ; Research Center for Zoonosis Control ; Hokkaido University ; N20 W10 ; Kita-ku ; Sapporo ; 001-0020 ; Japan
2. Unit of Risk Analysis and Management ; Research Center for Zoonosis Control ; Hokkaido University ; Sapporo ; Japan
3. Laboratory of Veterinary Pathology ; Faculty of Veterinary Medicine ; Bogor Agricultural University ; Bogor ; Indonesia
4. Veterinary Investigation and Diagnostic Center ; Bukittinggi ; Indonesia
5. Faculty of Agriculture ; Gorontalo State University ; Gorontalo ; Indonesia
6. Faculty of Animal Husbandry ; Sam Ratulangi University ; Manado ; Indonesia
7. Division of Collaboration and Education ; Research Center for Zoonosis Control ; Hokkaido University ; Sapporo ; Japan
8. Laboratory of Comparative Pathology ; Graduate School of Veterinary Medicine ; Hokkaido University ; N18 W9 ; Kita-ku ; Sapporo ; 060-0818 ; Japan
10. Global Virus Network ; Baltimore ; MD ; 21201 ; USA
9. Global Institution for Collaborative Research and Education (GI-CoRE) ; Hokkaido University ; Sapporo ; Japan

刊名：Archives of Virology

出版年：2015

作者：Yu-Cheng T Yang (1)
Chao Di (1)
Boqin Hu (1)
Meifeng Zhou (1)
Yifang Liu (1)
Nanxi Song (1)
Yang Li (1)
Jumpei Umetsu (1) (2)
Zhi John Lu (1)

1. MOE Key Laboratory of Bioinformatics ; Center for Synthetic and Systems Biology and Center for Plant Biology ; School of Life Sciences ; Tsinghua University ; Beijing ; 100084 ; China
2. Department of Biological Information ; Tokyo Institute of Technology ; Tokyo ; 152-8850 ; Japan

关键词：CLIP ; seq ; RNA ; binding protein ; RNA ; Regulatory networks ; Data integration

刊名：BMC Genomics

出版年：2015

作者：Keishi Sugimachi MD ; PhD (1)
Atsushi Niida PhD (2)
Ken Yamamoto MD ; PhD (3)
Teppei Shimamura PhD (2)
Seiya Imoto PhD (2)
Hisae Iinuma PhD (4)
Yoshiaki Shinden MD (1)
Hidetoshi Eguchi MD ; PhD (1)
Tomoya Sudo MD ; PhD (1)
Masahiko Watanabe MD ; PhD (5)
Junichi Tanaka MD ; PhD (6)
Shinei Kudo MD ; PhD (6)
Kazuo Hase MD ; PhD (7)
Masato Kusunoki MD ; PhD (8)
Kazutaka Yamada MD ; PhD (9)
Yasuhiro Shimada MD ; PhD (10)
Kenichi Sugihara MD ; PhD (11)
Yoshihiko Maehara MD ; PhD (12)
Satoru Miyano PhD (2)
Masaki Mori MD ; PhD (13)
Koshi Mimori MD ; PhD (1)

1. Department of Surgery ; Kyushu University Beppu Hospital ; Beppu ; Japan
2. Laboratory of DNA Information Analysis ; Human Genome Center ; Institute of Medical Science ; University of Tokyo ; Tokyo ; Japan
3. Department of Molecular and Cellular Biology ; Medical Institute of Bioregulation ; Graduate School of Medical Sciences ; Kyushu University ; Fukuoka ; Japan
4. Department of Surgery ; Teikyo University School of Medicine ; Tokyo ; Japan
5. Department of Surgery ; Kitazato University ; Sagamihara ; Japan
6. Digestive Disease Center ; Northern Yokohama Hospital ; Showa University ; Yokohama ; Japan
7. Department of Surgery ; National Defense Medical College ; Tokorozawa ; Japan
8. Department of Surgery ; Mie University ; Tsu ; Japan
9. Department of Surgery ; Takano Hospital ; Kumamoto ; Japan
10. Department of Surgery and Digestive Tract Medicine ; National Cancer Center ; Tokyo ; Japan
11. Department of Surgery ; Tokyo Medical and Dental University ; Tokyo ; Japan
12. Department of Surgery and Science ; Graduate School of Medical Sciences ; Kyushu University ; Fukuoka ; Japan
13. Department of Gastroenterological Surgery ; Graduate School of Medicine ; Osaka University ; Suita ; Japan

刊名：Annals of Surgical Oncology

出版年：2014

作者：Tomohiro Yasuda (1) (2)
Satoru Miyano (1)

1. The Human Genome Center ; Institute of Medical Science ; University of Tokyo ; Shiroganedai ; Minato-ku ; Tokyo ; Japan
2. Department of Computer Science ; University of Tokyo ; Hongo ; Bunkyo-ku ; Tokyo ; Japan

刊名：BMC Genomics

出版年：2015