作者：Natalia Macchiaroli (1)
Marcela Cucher (1)
Magdalena Zarowiecki (2)
Lucas Maldonado (1)
Laura Kamenetzky (1)
Mara Cecilia Rosenzvit (1)

1. Instituto de Investigaciones en Microbiolog铆a y Parasitolog铆a M茅dica (IMPaM) ; Facultad de Medicina ; Universidad de Buenos Aires (UBA)-Consejo Nacional de Investigaciones Cient铆ficas y Tecnol贸gicas (CONICET) ; Paraguay 2155 ; Piso 13 ; CP 1121 ; Buenos Aires ; Argentina
2. Parasite Genomics ; Wellcome Trust Sanger Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1SA ; UK

关键词：microRNAs ; High ; throughput ; Echinococcus canadensis ; Echinococcosis ; Cestode ; Parasite ; Platyhelminth

刊名：Parasites & Vectors

出版年：2015

作者：Kerstin Howe (1)
Jonathan MD Wood (1)

1. Wellcome Trust Sanger Institute ; Wellcome Trust Genome Campus Hinxton ; Cambridge ; UK

关键词：Optical mapping ; Genome Reference Consortium ; reference genomes ; genome assembly ; Rmap

刊名：GigaScience

出版年：2015

作者：Isidro Cortes-Ciriano (1)
Daniel S Murrell (2)
Gerard JP van Westen (3)
Andreas Bender (2)
Th茅r猫se E Malliavin (1)

1. D茅partement de Biologie Structurale et Chimie ; Institut Pasteur ; Unit茅 de Bioinformatique Structurale ; CNRS UMR 3825 ; 25 ; rue du Dr Roux ; Paris ; 75015 ; France
2. Centre for Molecular Science Informatics ; Department of Chemistry ; University of Cambridge ; Cambridge ; UK
3. European Molecular Biology Laboratory European Bioinformatics Institute Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1SD ; UK

关键词：Proteochemometrics ; Cyclooxygenases ; Chemogenomics ; QSAR ; Ensemble modeling ; Applicability domain

刊名：Journal of Cheminformatics

出版年：2015

作者：Julieta L Mateos (1) (5)
Pedro Madrigal (2) (6) (7)
Kenichi Tsuda (3)
Vimal Rawat (1)
Ren茅 Richter (1)
Maida Romera-Branchat (1)
Fabio Fornara (1) (4)
Korbinian Schneeberger (1)
Pawe艂 Krajewski (2)
George Coupland (1)

1. Department of Plant Developmental Biology ; Max Planck Institute for Plant Breeding Research ; D-50829 ; Cologne ; Germany
5. Present address ; Fundaci贸n Instituto Leloir ; Instituto de Investigaciones Bioqu铆micas de Buenos Aires - CONICET ; C1405BWE ; Buenos Aires ; Argentina
2. Department of Biometry and Bioinformatics ; Institute of Plant Genetics ; Polish Academy of Sciences ; 60-479 ; Pozna艅 ; Poland
6. Present address ; Wellcome Trust Sanger Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1SA ; UK
7. Present address ; Wellcome Trust - Medical Research Council Cambridge Stem Cell Institute ; Anne McLaren Laboratory for Regenerative Medicine ; Department of Surgery ; University of Cambridge ; CB2 0SZ ; Cambridge ; UK
3. Department of Plant Microbe Interactions ; Max Planck Institute for Plant Breeding Research ; D-50829 ; Cologne ; Germany
4. Department of Biosciences ; University of Milan ; 20133 ; Milan ; Italy

刊名：Genome Biology

出版年：2015

作者：Paul Charlesworth (1) (2)
Ellese Cotterill (3)
Andrew Morton (1) (4)
Seth GN Grant (5)
Stephen J Eglen (3)

1. Genes to Cognition Programme ; Wellcome Trust Sanger Institute ; Genome Campus ; CB10 1SA ; Hinxton ; UK
2. Current address ; Department of Physiology ; Development and Neuroscience ; Physiological Laboratory ; Downing Street ; Cambridge ; CB2 3EG ; UK
3. Cambridge Computational Biology Institute ; University of Cambridge ; Wilberforce Road ; Cambridge ; CB3 0WA ; UK
4. Current address ; Centre for Integrative Physiology ; University of Edinburgh School of Biomedical Sciences ; EH8 9XD ; Edinburgh ; UK
5. Centre for Clinical Brain Sciences and Centre for Neuroregeneration ; Chancellors Building ; Edinburgh University ; 49 Little France Crescent ; Edinburgh ; EH16 4SB ; UK

关键词：Multielectrode array ; Spontaneous activity ; Cortex ; Hippocampus ; Principal component analysis ; Support vector machine ; Classification tree

刊名：Neural Development

出版年：2015

作者：Elizabeth F Wiseman (1) (2)
Xi Chen (1) (3)
Namshik Han (1) (4)
Aaron Webber (1)
Zongling Ji (1)
Andrew D Sharrocks (1)
Yeng S Ang (2)

1. Faculty of Life Sciences ; University of Manchester ; Michael Smith Building ; Oxford Road ; Manchester ; M13 9PT ; UK
2. Faculty of Medical and Human Sciences ; University of Manchester ; Oxford Road ; Manchester ; UK
3. Present address ; The EMBL-European Bioinformatics Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1SD ; UK
4. Present address ; Gurdon Institute and Department of Pathology ; Tennis Court Road ; Cambridge ; CB2 1QN ; UK

关键词：FOXM1 ; MMB complex ; G2 ; M cell cycle phase ; Oesophageal adenocarcinoma

刊名：Molecular Cancer

出版年：2015

作者：Anika Oellrich (1)
Ramona L Walls (2)
Ethalinda KS Cannon (3)
Steven B Cannon (4) (5)
Laurel Cooper (6)
Jack Gardiner (7)
Georgios V Gkoutos (8)
Lisa Harper (4)
Mingze He (7)
Robert Hoehndorf (9)
Pankaj Jaiswal (6)
Scott R Kalberer (4)
John P Lloyd (10)
David Meinke (11)
Naama Menda (12)
Laura Moore (6)
Rex T Nelson (4)
Anuradha Pujar (12)
Carolyn J Lawrence (5) (7)
Eva Huala (13)

1. Wellcome Trust Sanger Institute ; Wellcome Trust Genome Campus ; Hinxton ; CB10 1SA ; UK
2. iPlant Collaborative ; University of Arizona ; 1657 E. Helen St. ; Tucson ; Arizona ; 85721 ; USA
3. Department of Electrical and Computer Engineering Iowa State University ; 1018 Crop Informatics Lab ; Ames ; Iowa ; 50011 ; USA
4. USDA-ARS Corn Insects and Crop Genetics Research Unit ; Iowa State University ; Crop Genome Informatics Lab ; Iowa State University ; Ames ; IA ; 50011 ; USA
5. Department of Agronomy ; Agronomy Hall ; Iowa State University ; Ames ; IA ; 50010 ; USA
6. Department of Botany and Plant Pathology ; 2082 Cordley Hall ; Oregon State University ; Corvallis ; OR ; 97331 ; USA
7. Department of Genetics ; Development and Cell Biology ; Roy J Carver Co-Laboratory ; Iowa State University ; Ames ; IA ; 50010 ; USA
8. Department of Computer Science ; Aberystwyth University ; Llandinam Building ; Aberystwyth ; SY23 3DB ; UK
9. Computer ; Electrical and Mathematical Sciences & Engineering Division and Computational Bioscience Research Center ; King Abdullah University of Science and Technology ; 4700 King Abdullah University of Science and Technology ; P.O. Box 2882 ; Thuwal ; 23955-6900 ; Kingdom of Saudi Arabia
10. Department of Plant Biology ; Michigan State University ; 220 Trowbridge Rd ; East Lansing ; MI ; 48824 ; USA
11. Department of Botany ; Oklahoma State University ; 301 Physical Sciences ; Stillwater ; OK ; 74078 ; USA
12. Boyce Thompson Institute for Plant Research ; 533 Tower Road ; Ithaca ; NY ; 14853 ; USA
13. Phoenix Bioinformatics ; 643 Bair Island Rd Suite 403 ; Redwood City ; CA ; 94063 ; USA

刊名：Plant Methods

出版年：2015

作者：Andrew C Nelson (1) (6)
Stephen J Cutty (1)
Marie Niini (2)
Derek L Stemple (3)
Paul Flicek (4)
Corinne Houart (2)
Ashley EE Bruce (5)
Fiona C Wardle (1)

1. Randall Division of Cell and Molecular Biophysics ; New Hunt鈥檚 House ; King鈥檚 College London ; Guy鈥檚 Campus ; London ; SE1 1UL ; UK
6. Current address ; Sir William Dunn School of Pathology ; South Parks Road ; Oxford ; OX1 3RE ; UK
2. MRC Centre for Developmental Neurobiology ; New Hunt鈥檚 House ; King鈥檚 College London ; Guy鈥檚 Campus ; London ; SE1 1UL ; UK
3. Wellcome Trust Sanger Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1HH ; UK
4. European Molecular Biology Laboratory ; European Bioinformatics Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1SD ; UK
5. Department of Cell and Systems Biology ; University of Toronto ; 25 Harbord Street ; Toronto ; ON ; M5S 3G5 ; Canada

关键词：Nodal ; Smad2 ; Eomesodermin ; Foxh1 ; Neural ; Transcriptional regulation

刊名：BMC Biology

出版年：2014

作者：Anna Sheydina (49) (50)
Ruth Y Eberhardt (51) (52)
Daniel J Rigden (53)
Yuanyuan Chang (49) (50)
Zhanwen Li (50)
Christian C Zmasek (50)
Herbert L Axelrod (49) (54)
Adam Godzik (49) (50) (55)

49. Joint Center for Structural Genomics ; 10550 North Torrey Pines Road ; BCC-206 ; La Jolla ; California ; 92037 ; USA
50. Bioinformatics and Systems Biology Program ; Sanford-Burnham Medical Research Institute ; La Jolla ; CA ; 92037 ; USA
51. Wellcome Trust Sanger Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridgeshire ; CB10 1SA ; UK
52. European Molecular Biology Laboratory ; European Bioinformatics Institute ; Wellcome Trust Genome Campus ; Hinxton ; Cambridgeshire ; CB10 1SD ; UK
53. Institute of Integrative Biology ; University of Liverpool ; Crown Street ; Liverpool ; L69 7ZB ; UK
54. Stanford Synchrotron Radiation Lightsource ; Menlo Park ; CA ; 94025 ; USA
55. Center for Research in Biological Systems ; University of California ; 9500 Gilman Dr ; La Jolla ; CA ; 92093-0446 ; USA

关键词：Glycoside hydrolase ; Carbohydrate metabolism ; 3D structure ; Protein family ; Protein function prediction ; Domain of unknown function ; DUF

刊名：BMC Bioinformatics

出版年：2014

作者：Arthur Gilly (1) (2) (3) (7)
Mathilde Etcheverry (4) (5) (6)
Mohammed-Amin Madoui (1) (2) (3)
Julie Guy (1) (2) (3)
Leandro Quadrana (4) (5) (6)
Adriana Alberti (1) (2) (3)
Antoine Martin (4) (5) (6) (8)
Tony Heitkam (4) (5) (6) (9)
Stefan Engelen (1) (2) (3)
Karine Labadie (1) (2) (3)
Jeremie Le Pen (10) (4) (5) (6)
Patrick Wincker (1) (2) (3)
Vincent Colot (4) (5) (6)
Jean-Marc Aury (1) (2) (3)

1. Commissariat a l鈥橢nergie Atomique (CEA) ; Institut de Genomique (IG) ; Genoscope ; 2 rue Gaston Cr茅mieux ; BP5706 ; 91057 ; Evry ; France
2. Centre National de Recherche Scientifique (CNRS) ; UMR 8030 ; CP5706 ; Evry ; France
3. Universite d鈥橢vry ; UMR 8030 ; CP5706 ; Evry ; France
7. Current address ; The Wellcome Trust Sanger Institute ; The Wellcome Trust Genome Campus ; Hinxton ; Cambridge ; CB10 1SA ; UK
4. Institut de Biologie de l鈥橢cole Normale Sup茅rieure ; F-75230 ; Paris ; Cedex 05 ; France
5. Centre National de la Recherche Scientifique (CNRS) ; UMR 8197 ; F-75230 ; Paris ; Cedex 05 ; France
6. Institut national de la sant茅 et de la recherche m茅dicale (INSERM) ; U1024 ; F-75230 ; Paris ; Cedex 05 ; France
8. Current address ; Technische Universit盲t Dresden ; Institute of Bota ; ny ; Plant Cell and Molecular Biology ; D-01062 ; Dresden ; Germany
9. Current address ; Laboratoire de Biochimie et Physiologie Mol茅culaire des Plantes ; Institut de Biologie Int茅grative des Plantes 鈥楥laude Grignon鈥? UMR CNRS/INRA/SupAgro/UM2 ; Place Viala ; 34060 ; Montpellier ; Cedex ; France
10. Current address ; Gurdon Institute and Department of Biochemistry ; University of Cambridge ; The Henry Wellcome Building of Cancer and Developmental Biology ; Tennis Court Rd ; Cambridge ; CB2 1QN ; UK

关键词：Transposable elements ; Structural variants ; Arabidopsis thaliana ; Resequencing ; DNA methylation

刊名：BMC Bioinformatics

出版年：2014